Trachemys scripta elegans (red-eared slider): 117889051
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Entry
117889051 CDS
T07347
Symbol
NPAS1
Name
(RefSeq) neuronal PAS domain-containing protein 1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117889051 (NPAS1)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117889051 (NPAS1)
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GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
SIS_2
Motif
Other DBs
NCBI-GeneID:
117889051
NCBI-ProteinID:
XP_034648753
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Position
16:complement(4639132..4737077)
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AA seq
874 aa
AA seq
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MAAPFGNEVKCVSVEWDFLQGLLVKNQPVPCLQALRKEKSRNAARSRRGKENFEFYELAK
MLPLPGAITSQLDKASIVRLTISYLKMRDFANHGDPPWGLRAEGSPPPGPAGKGPGRRNM
AALLTKLFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYI
HPGDHPEVAEQLGLKPPFDAVGSPPGSQKPPGLTGASSSSSLNEASEPDPTGSHAPPKHD
ALERSFFVRMKSTLTKRGLHVKTSGYKVIHVTGRLRPRLPSFSHAHSVLSRVLGLVALAH
TLPPSTLSEVRIECHMFVFRVNMDLQIVYCESRISDYMDLCPSELVGKNCYQFIHGEDVE
GIRQSHLDLLKKGQVVTRYYRWLQKNGGFVWIQSCATISVNIKNPSEKNMVWVNYILSKP
EYKNTALDIFQLPGIPARQTDASDVSDLEPDFKESDHGPEHKQGNQFLPKAAGALAKGYS
RSSPDDGARCSMAENDASSPETSYKDEEVSEGAGASDAESRRRGPRSKRIKLEFQPESPP
REASLVSTEESDSGSEEEPDLPPQPVALERRVNGYNMAAGRNAGPSRPCTSEFASVIQTQ
RSYPPKASAALSIKTEQSQAPKYDKATLWTYPSARDALHEGPPYTVSKALSLEKPILRQA
TSHLYVSIPDSVLTPPEMDSSGGLAKAPFSTSPRAMLPAPSAETLSPPLSGSPCEERATS
TPFAPLVYPGEMEALQRFHAGNVVLPLVHQLGGHHSIASTTGSQSLYTTSTIRYAPADVT
LAVPGSVLPASHAINLMDIGSAESKTSMELMYHHIQRLNMVAPFGNSASATGLAQISGAA
GGVFTAAESLFSTLPFSVASGGIHSLSAAERKED
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggcagccccattcggcaatgaggtgaagtgcgttagcgtagagtgggacttcttgcaa
ggactgttggttaagaatcagccggtgccctgtctgcaggccctgcggaaggagaagtcc
cgcaatgccgcccgctcccggcgcggcaaggagaactttgagttctatgagctggccaag
atgctgcccctgcccggcgccattaccagccagctggacaaagcctccatcgtccgcctc
accatcagttacctcaagatgcgcgactttgccaaccacggcgaccccccgtgggggctg
cgggccgaagggagccccccgcctggccccgccggcaaaggtcccggcaggaggaacatg
gcagctctgctgaccaagctctttgaacagcatctgggaggacacattttgcagtctctg
gacgggtttgtgtttgcactaaaccaagaggggaagtttctttacatctccgagacggtg
tctatttacctcgggctctcgcaggtggagctgacaggcagcagcgtctttgactacatc
catcccggagatcaccctgaggttgccgagcaactggggctcaagccgcctttcgatgct
gttggctccccaccggggagccagaaacccccaggcctcaccggggccagctcgtcctcc
tccctgaacgaggcctctgagcccgatcccaccggctcccacgccccccccaagcacgat
gccctggaacgatccttcttcgtccgtatgaaatccaccctgaccaagagagggctgcac
gtgaagacttctggctacaaggtgattcacgttactggccgtctccgtccccgcctgcca
tccttctcccacgcccattcggtcctcagccgagtcctggggctggtggccctggcccac
acgctgccgccttccacgctcagcgaggtgcgcatcgagtgccacatgtttgtgttccgg
gtcaacatggatctgcagatcgtgtactgcgagagcaggatcagcgattatatggaccta
tgcccctcggagctggtagggaaaaactgctaccagtttatccatggcgaggacgtggaa
ggaatccggcagagccacctggacttgttgaaaaaaggccaggtcgtgacccgatattac
cgctggctgcagaagaacgggggctttgtgtggattcagtcctgtgccaccatctcggtc
aatatcaagaaccccagcgagaagaatatggtctgggtcaattacatcctcagcaaaccc
gagtataagaacacggccctggacatcttccagctgcctgggattccagcccgacagacc
gatgcctccgacgtgtccgacttggaacctgacttcaaagagagcgaccatgggccggaa
cacaagcaggggaaccagtttctgcccaaagcggctggggccttggccaaaggttactcc
cggagcagcccagatgacggggcccgttgctccatggcggagaacgatgccagcagcccg
gaaacgagctacaaggatgaggaggtgtcggaaggagctggggcaagcgacgccgagagc
aggcgcagggggccccggagcaaacggatcaagttggagttccagccggagagccccccc
cgggaggcctcgctcgtcagcaccgaggagtcggacagcggcagcgaggaggagcctgat
ctcccgccccagccggtggcgctggagaggagggtgaacgggtacaatatggctgcaggg
cggaacgcggggccgagccggccctgcacatcagagttcgcctctgtcatccagacccag
aggagctacccaccgaaagccagcgcggcgcttagcattaagacggagcagagccaggct
cccaagtacgacaaggccaccctgtggacctacccctctgcccgggatgccctccacgag
ggacccccctacactgtgagcaaagcacttagcctggagaagcccattctgaggcaagcc
acttcccacttgtacgtctccatcccggactctgtcctcacccctcccgagatggacagc
agcgggggcctggccaaggcccccttcagcacctctccccgggctatgctgccagccccc
tcagctgaaacgctctcccccccgctctcgggctcaccgtgcgaggaaagggccacgtcg
acgcccttcgcccccctggtctatcctggcgagatggaggcgctccagcggttccacgcg
gggaacgtggtcctcccgctggtgcaccagctcggcgggcaccacagcatcgccagcacc
acaggctcccagagcctctacaccaccagcactatccgatacgccccggccgacgtgacc
ctggctgtgccaggcagtgtgctgcctgcctcccacgcaatcaacctcatggacatcggc
agcgcggagtccaagacctccatggaactcatgtaccaccacatccagcggctcaacatg
gtggcgccgtttgggaactcagcaagcgccaccggtttggcgcagatttcgggcgctgcg
gggggcgttttcacggccgccgaatccttgttctctacgctgcccttctccgtggccagc
ggcggcatccacagcctgtcagccgcagagcgcaaagaggactaa
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