Trachemys scripta elegans (red-eared slider): 117889319
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Entry
117889319 CDS
T07347
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117889319 (SETX)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117889319 (SETX)
5.6.2.5 RNA 5'-3' helicase
117889319 (SETX)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117889319 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
AAA_16
SLFN-g3_helicase
NAT10_TcmA_helicase
nSTAND3
WavE
Motif
Other DBs
NCBI-GeneID:
117889319
NCBI-ProteinID:
XP_034649168
LinkDB
All DBs
Position
17:complement(16449547..16495530)
Genome browser
AA seq
2864 aa
AA seq
DB search
MSTCRWCTPGGSSTTQFLRTYASKTLSPEDRAAANDDLCYCLECVVEYHKARDELPGLLQ
EILWELETSRLIDHFEKSMKTDIEEDDELFIVDDNGETKLSGYTGPDFENHLRVPLLEIL
KYPYLLLHARISELCVEALCKMEQVNFSFQVFDKHPGIYLLLVHPNEVIRRWAILTARNL
GKVDRDDYYDLQEVLTCLFKVIELGLFDSPDIYSSSMIEKGKLILLPSHLYDTTNYKNYW
LGICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKQTDDESIDPFWPALHCFMVILD
QLGSKVWGQLIDPVQAFQTIINNVSYNNEIKNIRNSSRRTKSEPESNYEEEMVSCSQIVY
NYNTEKPKKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGQDMRVHNSTFLWFIPFVQS
LMDLKDLGVAYIVEVIHHLCSEIKGFLSERVQQCDKVSEFFILILVSVVELHRNKKCLHL
LWISSQEWVEAVVKCANLPTIAFTRCSEKAPGNCPKVTSAISSQASNSVQHACVQLIRSL
LREGYQLGQQTVCKQFLDKLNLLLRGNLPLGWQLKNREIQELQMCLKQVIRSIKDRSSNA
SIPVENSVICTNLSTIPIKQEKGTASDKCQMNIQHGDSLSPPFSLASGSDEACQESSSPR
RRGIGEEEYREMSFNNRKLCVTAECLLTDIKKEPHDRLFQECEHPDSSGATKIHKNTHKN
GNNYQVQGNQNKNNSLLKQCFNTSPQVSDFKSHAILERDETEVRMPECLSAQSCSSSHED
THSSNGKDGNGSPNSCSKFKIDPNKITNLKTQVQNAGWTTKLLQLMKQSASNSEIDQQQS
HSESLYTSKDGSRDQEANILSEGETSVNFNTSNGSENKQENSMNSTFQIKLLSLKQESND
TKADYSNSFKKEAGLEESESGDEDDNIPLATFKRYLKKKRSFSRRSSSLPKPLLNKDLNT
EIPDQGQSNSGSLCPKRSDLKDQKVSMQRTDETSANFNIPSSSENKGEIPRNAPLISPLL
IKHESTDRLLDFSRYYKGEGDSEEKINIEDNAEIAGDLVKKKSGASPLTDSQIDRDLDKL
SLAAYAKGVNFPVASSQEHSIHRCDIKRKVKGAVRSSTKGQSNESSSDTDCPNNEVIVIS
DSSSDEEKKLGIKKPVKKEVCVCPEKQPLTSGYVSDSANKKEQLKTRSSPLPCEEHNSQF
FEFETEDDVFSVWQDSQINDEEVNQAQEQDSNLTSTSTTDSFELADRTNDWGYDTDYISD
DVIEKAEEIVERQVDSLSHKKVSKTGTKSEAPFQEPAIKGNATAQSENFTQPDAVAKDHA
KNTGLMEPRASTSSVSLASKLTIKKSTLSPGRSLAKSKMVRTALRSPRKMSLKTVQNKKL
AQTSSRNTELRRSTPAVVPPKKVRQCPEPTLTVEKLGLKKAPRKAFELSQRSLDSLAELR
SYGKAAGAVQTPQKQKTKLIAPQNLVIKHNRKMLACQDLQFLRQIRPTQVGRGKNQVGSS
EDRSKKITKKSDPRHPIQQLVAFDPVSAAGTSEKQKERRAEQICYPSSNGGKKVRKSFSS
EREEVQTTHMDKMTPHASKESNMKIEENNMAGPALQIESCFSSSLTGDYKNEPAEREYVV
PLVSPSTPHFEGATLKESKPTLNENSDEDDLFLTQLDPVDMEMCSQMENIGDIIIASEKE
PLDTKVDAAESLLQNEPLGILKCKYKDCTEQVEKAGEYCSKHSATSASDHLFIKPSLPPP
KPEKPSTTKHFSSNSSSRSDILTKDFENNSKRSLPSKAKSKVVKSSVSKTGNPKAVSSEN
QIFKIPSFSISLQSQSSSNVLRPQNMQTNSTSCFPNRSASGAHSGQERGLPSFPQANALV
TQQRDHSIFVTEVLKWNYEMFVNLSQFGLPYNLQSIMVSVPVKFHGYNDYFNTFFPLMML
NAFETVAQEWIQNQKTREKNSYHLHLQNFCADLNRADFTACIRESDLAKQLHPKEDDLIF
LVVPEKQNTFAEESEMESHLVYHVGFVTRFSRASLRETRQNEQHVVCHLSVQTRGNLSYY
LNQPVKCVVVSSLVTTQRRFKGLLLLSRSPLAKPIINPSYADFCPRDLNVTSESSTSYMR
DYNADQKKAIETAYAMVKEHPRLPRICLIHGPPGTGKSKTIVGLLYRILTERSGNENRAQ
NLNAKIKRNRILVCAPSNAAVDELMKKIILEFKEKCQDRKNPLGNCGDINLVRLGPEKSI
SIDVLKFSLDSQVSHRMNRGQPGRDQDIHRKKETLDCQLDSLSRQRAMDRCDKRQQSQRL
DEEIARLSRERQQLTSQLKKVGGRPQEVQASIILESHIICCTLSTSGGFLLESAFRRQGL
DPFSCVIVDEAGQSCEVETLIPLIHRCSKLVLVGDPKQLPPTVISMKAQEYGYDQSMMAR
LHKHLEEQMQQCVIGKLPVVQLTIQYRMHPDICLFPSNYIYGRTLKTDRATEENRCSSDW
LFQPYLVFDVADGHEKRDNDSFANPQEVKLVMEIMKLIKEKKNDFGFRHIGIITPYSAQK
KMIQQELDREFGRGRAGEVDTVDGFQGRQKDCIIVTCVRANSTQGSIGFLASLQRLNVTI
TRARYSLFILGRLTTLMENKDWNKLIQDAQRRGAIIKTCDKNYKKDTVKILKLKPALQRP
LSYPPTAALSEKATQVQACLGSDGKNKVTNRKSSNDSRRLSASAGLSAQGSGVVRQPPES
QVLGSKGVTLPTAVQPAVRERPRDPRLARRTEATGKEQASKNSSPSALSNPDVTLSRGPD
ASSAHWGQISTVQPPVSKAEDLNKTNQTVRQPDMPFTASHTARQDHDWRVSVSSKEARTV
SKEDQKGNEWTKDKDYRTPASRRASEQPPENKDLSEAKRRKVSY
NT seq
8595 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgttggtgtacgcctggtggttcctccaccacccagttcctaagaact
tatgcttccaagactttgtcccctgaagatcgtgcagcagccaatgatgatctgtgttac
tgcctggaatgtgtggttgaatatcacaaggcaagggatgaattgcctggcttactgcag
gagatcttatgggagttggaaacctcccgtctcattgaccactttgagaaatccatgaag
acagatattgaagaggatgatgaattatttatagtggatgacaatggggaaactaaactg
tctggttacacaggcccggattttgagaaccacctgcgtgtacctcttctagaaatactg
aaatacccgtacctgctgctacatgcacgaatcagtgagctctgtgttgaggctctttgt
aaaatggaacaagttaacttctcctttcaggtctttgacaaacatccaggcatttatctg
ttgttggtacaccccaatgaagtgattcgtcgatgggccatcctgacagcaagaaattta
gggaaagtcgacagggatgattactatgacttacaggaagtgttgacttgcttgtttaaa
gtcattgagttgggactgtttgacagtcctgatatttatagttcttcaatgattgagaag
gggaaactcattcttctgccatcccatttgtatgataccaccaactacaaaaactactgg
cttggtatctgtatgttgctaacagtgctggaagaacaagctatggattctttgttgctg
ggtccagataaacagaatgatttcatgcagtctatacttcacaccatggagaaacaaaca
gatgatgaaagcattgatcccttctggccagcgctgcactgtttcatggtgattttggat
cagctcgggtctaaagtgtggggtcaactcatcgatccagtccaggcctttcaaaccatt
atcaacaatgtcagctacaacaatgaaataaaaaatatacgcaatagttcaaggaggact
aaatctgaaccagagtcaaactatgaggaggaaatggtttcttgcagccagattgtgtat
aattacaatacagaaaagcccaaaaaggatactggatggaagacagccatttgtccagat
tattgccccaacatgtatgaagatatgcagacattggctaatgtgcttcaatctgatatt
ggccaagatatgcgtgtccataatagcacatttctatggtttattccttttgttcagtcc
ctaatggacctcaaggacttgggcgtggcttatatagtagaggtcattcaccatctgtgc
tcggaaatcaaaggctttctcagtgaaagagtccagcaatgtgacaaagtttctgaattt
ttcatcctgattctggtgtcagttgttgaactacacagaaataaaaagtgccttcatttg
ctgtggattagctctcaggaatgggtggaagcagtagtgaaatgtgctaaccttccaacc
atagcatttacgcgctgctctgaaaaagcacctggaaactgtcctaaagttacatcagca
atatcttcacaggcttctaactctgtacagcatgcttgcgtgcagttgatacgcagcctt
cttcgagaaggctaccagttagggcaacaaactgtttgcaagcagtttctagataaactc
aatctgcttttgcggggaaacttacctctgggttggcagctgaagaaccgggaaattcag
gaattgcaaatgtgtttaaagcaggtaataagaagtataaaggacagatcatcaaatgct
tccatacctgtggaaaatagcgtgatttgtacaaatttgtccacaattcctataaagcaa
gaaaaagggacagccagtgataagtgtcagatgaatatacaacacggagatagcctcagt
cccccattttctttagcatctgggagcgatgaggcttgtcaagagagttcttcccctaga
agaagaggcatcggggaagaggaatatagggaaatgtcttttaacaatagaaaattatgt
gtaactgcagaatgccttttgacagatattaaaaaagaacctcatgataggttatttcag
gaatgtgaacatcccgatagctctggagcaacaaaaatacacaagaatacccataaaaat
ggaaacaactaccaagtgcaggggaaccaaaataagaataactccttacttaaacagtgc
ttcaatacaagtcctcaagtctctgatttcaaaagtcatgctatattggaaagagacgaa
acagaagtgaggatgccagagtgtctgagtgctcagtcttgttccagttctcatgaagac
actcacagctcaaatggaaaagatggaaatggctcccctaattcctgttcaaagtttaag
atagatcctaataaaatcacaaatttgaaaacccaggtacagaatgctggttggaccaca
aaactactacagttaatgaagcaatccgcttcaaattcagaaatagaccaacaacagtct
cactctgagtctctctatacaagtaaagatggcagcagagatcaggaagcgaatattttg
agtgaaggtgaaacctcagttaactttaatacttcaaatggttctgaaaataaacaggag
aacagcatgaacagtacttttcaaatcaagctgctctctcttaagcaggaatcaaatgat
accaaggcagattattcaaattcctttaaaaaagaggctggcttggaagaaagtgaaagt
ggcgatgaagacgacaatattccacttgctacgtttaaacgttatttaaagaaaaagaga
tccttttcaagaagatcgagttctttgccaaagcctttactgaataaagaccttaacaca
gagataccagatcaagggcagtctaattctggcagtttatgcccaaagagaagtgacctc
aaagatcaaaaagtgagcatgcaacgtacggatgaaacttcagcaaattttaacattcca
tctagttctgaaaataaaggggagatacctaggaatgctcctctaatcagtccgctcttg
attaagcacgaatcaactgacagactgttagatttttcaagatattataaaggagaaggt
gattcagaggaaaaaataaatattgaagataatgcagaaattgcaggtgatttggtaaaa
aagaaatctggagctagccccttaacagactctcagattgatagagaccttgataaatta
tccttagctgcttatgccaaaggtgtcaattttcctgttgcttcaagccaagaacactca
atacatcggtgtgacattaaaaggaaagtaaaaggtgctgttagatcatccacaaagggc
caaagtaatgagtcctcttctgatacagattgtcccaacaatgaagtcattgtcatttca
gattcctcttctgatgaggaaaaaaagttgggtattaagaagccagtaaaaaaagaggtg
tgtgtatgtccagaaaaacaacctttaacatctggctatgtttctgatagtgcaaacaaa
aaagagcaattgaagactcgtagctccccgttgccgtgtgaggaacataattctcagttt
tttgagtttgaaactgaagatgatgtcttttcagtctggcaagattctcagataaacgat
gaagaagtgaatcaggcacaggaacaagactctaacttgacatcaacaagtactacagat
agttttgagttggcagatcgtacaaatgactggggttatgatacagattacatcagtgat
gatgtcattgaaaaagcagaagagattgttgaaaggcaggtagattctctctctcataag
aaagttagtaaaactggcacaaaatctgaggcaccttttcaagagcctgctatcaaggga
aatgcaactgctcagtctgagaattttactcagccagatgctgttgctaaagaccatgcc
aaaaacacaggcttgatggagcccagagcatctacatctagtgtatcattagcttcaaag
ttgactattaaaaaaagcactttaagcccaggcagaagtttagcaaaatccaagatggta
agaactgctcttagaagtcccagaaaaatgagccttaaaactgtacaaaacaaaaaactt
gctcaaactagttctagaaatactgagcttcgcagatcaacccctgctgtagttcctcca
aagaaagttcgccaatgtcctgagccaactttaactgtggaaaaacttggcctaaaaaag
gccccccgcaaagcatttgagttatcccagcgatccttagatagtctggctgaattgcgc
agctatgggaaagctgctggggcagttcagactccacagaaacaaaaaactaaattaatt
gctccacagaatctagttataaaacataatagaaaaatgttagcctgccaagatcttcag
tttttaaggcagataagacccacacaagtggggagagggaaaaatcaggtaggaagttct
gaggacagaagcaaaaaaataactaaaaagtctgatccaaggcatcctatacaacagctg
gtggcgtttgacccagtatctgctgcaggaactagtgaaaaacaaaaagagaggagagca
gagcagatatgctatccctcaagcaatggtggaaaaaaggtgagaaaaagcttctcatct
gagagagaggaagtccaaaccacacatatggataaaatgacgccacatgcttctaaggaa
tctaacatgaaaatagaagaaaacaatatggcaggtcctgcattacagatcgaatcctgt
ttttcttcatctttaactggagactacaaaaatgaacctgcagagagagaatatgttgtc
cctctggtttccccatctacgcctcactttgagggggcaactctgaaagagagcaagcct
acattaaatgaaaacagtgatgaagatgatttatttttaactcagttagatcctgtggat
atggaaatgtgttcacagatggaaaatattggcgatattataatagctagtgaaaaagag
ccactagacacgaaagttgatgctgctgaaagtctgctgcagaatgagcccttaggtatt
ttgaagtgtaaatacaaagattgtacagaacaggtggaaaaggcaggggagtactgtagt
aagcattctgccaccagtgcttcagatcatctctttatcaagccaagtttaccaccacct
aagcctgaaaaaccttccactactaaacatttcagctcaaatagctcttcacggagtgac
atcctcaccaaggattttgaaaataattcaaagcgctcattgccgtcaaaagccaagtca
aaagtggtaaaatccagtgtctccaagacagggaatccaaaagctgtatcatcagagaac
cagatattcaagatcccaagtttcagcattagtcttcagtcccagagttccagcaatgtt
ctccggccccagaacatgcagacaaacagtacttcatgttttcccaacaggtctgcctcg
ggggctcattcagggcaagaaagaggtctcccttcctttccacaagcaaatgctcttgtc
actcaacagcgtgatcatagtatttttgttacagaggtcctgaaatggaactatgaaatg
tttgtcaacttgagccagtttggacttccatataatcttcaatccattatggtctctgtt
cctgtcaaatttcatggatacaatgactattttaatacatttttccccttgatgatgcta
aacgcctttgaaacagttgcacaggaatggatacaaaaccagaaaacaagagagaaaaat
agttatcatttgcacttacaaaatttctgtgctgacttgaatcgagcagattttacagca
tgcattcgggaaagtgatctggcaaaacagcttcatccaaaggaggacgacttgatcttt
ttggtggtgcctgaaaaacaaaacacctttgcagaagaaagcgagatggagagccatcta
gtgtatcatgttggttttgtgacccgcttctcccgtgcatcactccgtgaaacaaggcaa
aatgagcagcatgttgtctgtcacctttccgtccaaactcgaggcaatttgtcatactac
ctaaaccagccagtgaaatgtgtagtggtcagctctctagtgactacacaacgaaggttc
aaaggtctgctactgttgagcaggagtcctctggctaaacccatcataaatccaagttac
gctgacttctgtcccagggatttgaatgtaacttccgagagctctacttcctacatgaga
gactacaatgcagatcagaagaaggctattgaaactgcttatgctatggtgaaggagcat
ccaagacttcccagaatctgcctgattcatgggccacctgggacagggaaatcaaaaact
attgttggactcctgtaccgtattctgacagagaggtctgggaatgagaatcgagctcaa
aacttgaatgccaagatcaagcgaaaccgtattctggtttgtgcaccatccaatgctgct
gttgatgaactcatgaaaaagataatcctggaattcaaagaaaaatgccaagacagaaaa
aatcctttgggaaattgtggagatataaacttagtgcgactaggtccagaaaagtcaata
agcattgatgtcctgaaattcagcctggacagccaagttagccacagaatgaaccgggga
caacctggccgtgaccaggatattcacaggaaaaaggaaaccctggattgccagctggac
agtctctctcggcagcgtgccatggatagatgtgataagaggcagcagagtcaaaggtta
gatgaggaaattgccagactttcaagggagcggcaacaactcacttcccaactgaagaag
gtcggagggcgccctcaggaagtgcaggctagcatcatcttggagtcccacatcatctgt
tgcacattgagcacaagcggaggctttctgctggagtctgcttttcgccggcaaggactt
gaccctttcagctgtgtcattgtggatgaggcggggcagtcatgtgaggttgaaactcta
attccactgattcatcgctgtagtaaacttgtccttgttggagatcccaagcagctccct
cctactgtaatatctatgaaagctcaagagtatggctatgatcagtctatgatggctcgc
ctgcacaaacacctggaggaacagatgcaacagtgtgttatagggaagctgccagttgtg
cagctgactatacaatataggatgcatcctgacatctgtctcttcccatccaattacatt
tatggcaggactttaaagactgacagagcaacagaagagaacagatgttcttcagattgg
ctattccagccatacctggtctttgatgtagcagatggccacgaaaaacgggataatgac
tcttttgctaatccccaggaagtgaagctggtgatggaaataatgaaattgattaaagaa
aaaaagaatgattttggttttcgtcacataggaataattaccccttacagtgcacagaaa
aagatgattcagcaagagctggacagagagtttggaaggggcagggcgggggaagtagac
acagttgacgggttccagggtcgacagaaagactgcattatagtgacgtgtgtaagagcg
aacagcacacaagggtcaattgggtttctggcaagtcttcagcgtctgaatgttacaatt
actcgagcaaggtacagcctcttcatccttggaagactgacaacgttaatggaaaataaa
gactggaataagctgattcaggatgctcagagaagaggcgctatcatcaagacttgtgac
aaaaactataaaaaggatactgttaaaattctgaagctcaaaccagcattacagcggcca
ctctcctatcctcctaccgctgcactgtcagagaaagctactcaagtgcaggcgtgtttg
ggcagcgatgggaagaataaggtcaccaacagaaaaagcagcaatgactctagaagactc
tctgccagtgctggcctgtcagcacaaggcagtggagtagtccgacagcccccagagtct
caagttttgggttctaaaggagtcactcttcccacagcggtgcagcctgctgttcgagag
agacctcgggatccaagactggctaggaggacagaagcgacagggaaggagcaggcctcc
aagaacagcagtccatcagccctgagcaatccagatgtgacattgtcacggggacctgat
gcatcttcagcccactggggtcagatcagcactgtgcagcctcctgtctccaaggcagaa
gatttgaacaagaccaaccaaactgtaagacagccagacatgcctttcactgcttcccat
acagccaggcaggaccatgactggagagtttctgtctcatcaaaagaggcaagaactgtc
agtaaagaagaccagaaaggtaatgagtggaccaaagacaaggactatcggacccctgca
agcagaagagcatcggaacaacccccggagaacaaagacttgagtgaggccaagaggagg
aaggtctcctattag
DBGET
integrated database retrieval system
