Trachemys scripta elegans (red-eared slider): 117889346
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Entry
117889346 CDS
T07347
Symbol
NOTCH1
Name
(RefSeq) neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117889346 (NOTCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
Ank_2
EGF_2
Ank
NOD
Notch
NODP
Ank_5
Ank_4
Ank_3
EGF_3
EGF_DL_JAG
Relaxase
Motif
Other DBs
NCBI-GeneID:
117889346
NCBI-ProteinID:
XP_034649237
LinkDB
All DBs
Position
17:19877296..19959412
Genome browser
AA seq
2538 aa
AA seq
DB search
MQQLLVQSLLLSLLPVLSRGLRCTQPAESCLNGGKCETYSNGTGVCLCNSAHVGDRCQLP
NPCLSSPCKNAGTCHPVIRGNAVDYTCSCRLGFTDRLCLTPEENACLNNPCRNGGTCDLL
TLTEYKCRCPPGWSGKTCLQADPCASNPCANGGQCVPFEAHYVCKCTAGFHGANCKQDVN
ECITSPPICKNGGTCTNEVGTYQCSCKPAYTGQNCEHLYVPCNPSPCQNGGTCRQTGDTT
YDCTCLPGFAGQNCEDNIDDCPGNNCKNGGTCVDGVNTYNCQCLPEWTGQYCTEDVDECQ
LMPNACQNGGTCHNNHGGYNCVCVNGWTGEDCSENIDDCAMAACFQGATCHDRVASFYCE
CPHGRTGLLCHLDDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACNQDIDECSLGA
NPCEHAGKCINTQGSFQCQCLQGYSGPRCEIDVNECLSNPCQNDATCLDQIGEFQCICMP
GYEGIYCEINTDECASSPCLHNGNCIDKINEFHCECPTGFNGHLCQYDIDECASTPCKNG
AKCIDGPNTYTCECTEGFAGAHCEIDKNECDPDPCHYGTCRDGVAAFTCLCQPGYTGHLC
EFNINECQSQPCKNGGTCQDRDNAYNCLCLKGTTGPNCEINLDDCASNPCDYGKCLDKIN
GYECTCEPGYTGRMCNINIDECAGNPCHNGGTCKDGINGFTCICPEGYHDPMCVLEVNEC
NSNPCIHGKCNDGLNGYRCDCDPGWSGTNCDINNNECESNPCMNGGTCKDMTSGYICTCR
EGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGATCEDVLAPCAAGPCKN
GGECRESEDYESFSCVCPSGWQGQTCEIDINECVKSPCRNGATCQNTDGTYRCNCKAGYT
GHNCDTDIDDCKPNPCHNGGSCSDSIDAFFCDCLAGFRGLKCEEDINECASNPCKNGANC
TDCVNSYTCTCPSGFSGIHCENNTPDCTESSCFNGGTCVDGINTFTCVCPPGFTGSYCEH
DINECDSKPCLNGGTCQDSYGTYKCTCPQGYTGLNCQNLVRWCDSSPCKNGGKCWQTNNL
YRCECNSGWTGLYCDVPSVSCDVAAKQQGVDMVHLCRNSGLCVDTGNTHFCRCQAGYTGS
YCEEQVDECSPNPCQNGATCTDYLGGYSCECVAGYHGVNCSEEINECLSHPCQNGGTCID
LINTYKCSCPRGTQGVHCEINVDDCSPFFDPVTLGPKCFNNGRCIDRVGGYSCNCPPGFV
GERCEGDVNECLSNPCDARGTQNCVQRVNDYKCECRQGYAGRRCDTVVDGCKGKPCRNGG
TCAVASNTGWGFICKCPPDFDGATCENDSRTCGNLRCLNGGTCISSHMSSRCICDPAFTG
PDCQYPISSPCHSNQCYNGGTCEYFSDAPPYFRCKCPANFNGLYCHILDFDFPGGIGWDI
PPHTIEEKCEIPDCAGFAGNKICDAKCNNHSCGWDGGDCSLNFNDPWKNCSQSLECWKYF
NNERCDKQCNNSGCLYDGFDCQKVEGQCNPLYDQYCKDHFSDGHCDQGCNNAECEWDGLD
CANNMPEKLADGTLVVVVLITPENLKNNSFNFLRELSRVLHTNVVFKKNPKGEYMIFPYY
GNEEELKKHHIKRSTENWSDMPSAVFNTIKTSLSSRVGERQRRELDQMDIRGSIVYLEID
NRQCIQSSSQCFQSATDVAAFLGALASLGNLNIPYKIEAVKSETAEPQRNSQLYPMYVVV
AALVLLAFIGVGVVVSRKRRREHGQLWFPEGFKVTESSKKKRREPLGEDSVGLKPLKNAS
DGTLMDDNQNEWGDEETLDTKKFRFEEQAMLPDMDDQTDHRQWTQQHLDAADLRISSMAP
TPPQGEIDADCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL
HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL
IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINCHADVNAVDDLGKSALHWAAAVNN
VEAAMVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI
AQERMHHDIVRLLDEYNLVRSPPLHNGPLGAPTLSPPLCSPNSYIGNLKPNVQGKKARKP
STKSLSCNSKDSKDIKARRKKSQDGKGCLLDSSSVLSPVDSLESPHGYLSDVASPPLMTS
PFQQSPSMPLNHLPGMPDAHMSINHLNMAGKQDMAMGNSSRMAFDSVPPRLSHLPVSSPS
TVMSSAPMNFTVGGAASLNGQCDWLTRLQNGMVQNQYNPMRSNIQPGAHQQTQALQHGMM
TSLHNGMPTTTLSQMMSYQPMPNTRLASQPHLMQAPQLQQIQQQQNLQQQLQQQNLQQQQ
HHNTSSNPNAHISQNFLSNELNQSDMQQVSSTTMTVHTILPQETQILSTSLPSSLTQPMT
TTQFLTPPSQHSYSSPLDNTPNHQLQVPDHPFLTPSPESPDQWSSSSPHSNISDWSEGIS
SPPTSMQSQIGHIPEAFK
NT seq
7617 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaacttctggtgcagagcctcctgctgtcactgctgcccgtgctgagccgaggt
ttacgatgtacccagcctgctgaatcctgcttgaatgggggaaagtgtgaaacttactcc
aatgggactggggtatgcctatgcaacagtgcccacgtaggcgaccggtgccagctgcca
aacccctgcctcagctccccgtgcaagaatgccggcacctgccacccggtcatccgtggc
aatgctgtggactacacctgttcctgccgcctgggcttcacggaccggctgtgcctgact
cccgaggagaacgcctgcctcaacaacccctgccgcaatggagggacctgcgacctgctc
acgctgactgagtacaagtgccggtgccctccgggatggtcaggaaagacctgcctgcag
gcagatccctgtgcctccaacccctgtgccaacggagggcagtgcgttcctttcgaagcc
cattatgtctgcaagtgcactgcgggcttccacggggccaactgcaagcaggatgtgaac
gagtgcatcaccagtccccccatctgcaaaaatggcgggacctgcaccaatgaggtcggg
acctaccagtgttcctgcaagccagcgtacacgggccagaactgtgagcacctctatgtg
ccttgcaacccctcaccctgccagaacgggggcacttgccgtcagaccggcgacaccacc
tacgactgcacgtgtcttccaggttttgctggtcagaactgtgaggacaacattgatgac
tgtcctgggaacaactgcaagaatggaggcacctgtgtggatggagttaacacctacaac
tgccagtgccttcctgagtggacaggccagtactgcactgaagatgtagatgaatgccag
ctcatgccgaatgcctgccagaatggaggaacgtgccacaacaaccacggtggctacaac
tgcgtctgtgtcaacggctggaccggcgaggactgcagtgagaacattgacgactgcgct
atggctgcctgcttccagggtgctacctgccacgaccgggtggcctctttctattgcgag
tgcccacatggccgcacaggcttgctgtgccacctggatgacgcctgcatcagtaacccc
tgcaacgaaggctccaactgcgacaccaaccctgtcaacggcaaagccatctgcacctgc
ccctcgggttacacgggcccggcctgtaaccaagacatagacgagtgctctctaggagcc
aatccttgtgagcatgctgggaaatgcatcaacacccaagggtccttccagtgccagtgt
ctccaggggtattcaggcccccgctgtgagatcgatgtcaatgaatgcctctcgaatccg
tgccagaacgacgccacctgcctggaccagatcggtgaattccagtgtatctgcatgcca
ggttacgagggcatttactgtgaaatcaacacggacgagtgtgccagcagcccctgcctg
cacaacgggaactgcatcgataagatcaacgagttccactgcgagtgccccacaggcttt
aacgggcacctgtgtcagtatgacatagatgagtgcgccagcacaccgtgcaagaacggg
gctaagtgcatcgacggccccaacacctacacctgcgagtgcacagaaggatttgctggt
gctcactgcgaaatcgacaaaaacgaatgtgaccctgacccgtgccactacgggacctgc
agagacggcgtcgctgccttcacctgtctctgccagcctggctacacgggccacctctgt
gaattcaacatcaacgagtgccagagccagccgtgcaaaaatggagggacctgccaggac
agggacaacgcctacaactgcctgtgcctcaaaggcaccacggggcctaactgtgaaatc
aacctggatgactgtgctagcaatccgtgtgactacggcaagtgcctagacaagatcaat
ggctatgaatgtacctgcgagccaggctacaccgggagaatgtgcaacatcaacatcgac
gagtgtgccggcaacccgtgccacaatggcggaacctgtaaggacggcatcaacggcttc
acgtgcatctgccccgagggataccacgaccccatgtgcgtgctggaagtgaatgagtgt
aacagcaacccctgcatccatgggaaatgcaatgacggactcaatggctacaggtgtgat
tgtgacccaggctggagcgggacaaactgcgacatcaacaacaacgagtgtgaatcgaat
ccttgcatgaacgggggcacctgcaaggatatgaccagcggatacatctgtacctgccgg
gagggattcagtgggcccaactgccagaccaatatcaatgaatgtgcttccaacccttgc
ctgaatcagggaacctgcatagatgatgtagccggctacaaatgcaactgtctcctgcca
tatacaggggctacgtgcgaggatgtgctagctccgtgtgcggctggtccatgtaagaat
ggtggcgagtgcagagagtcggaggactacgagagcttctcctgcgtgtgcccttccggc
tggcaaggtcaaacatgtgagattgacatcaacgaatgtgtgaaaagcccctgtcgaaat
ggcgccacgtgccagaacacagatgggacctaccgctgcaactgcaaagcgggctacacc
ggccacaactgcgacaccgacatcgatgactgcaagccaaatccctgccataacggcggc
tcctgctctgacagcatcgacgccttcttctgcgactgcctggcaggcttccgggggctc
aagtgcgaggaggacatcaacgagtgcgccagcaacccctgcaagaatggggccaactgc
acggattgtgtcaacagctacacgtgcacctgcccctctggcttcagcgggatccactgt
gagaacaacacacctgactgcacagaaagctcctgttttaatgggggaacctgcgtcgac
ggcatcaacaccttcacctgcgtgtgcccacctggcttcacaggcagctactgcgagcat
gacatcaacgaatgcgactccaagccgtgcttgaatgggggcacctgccaggacagctac
gggacctacaagtgcacctgtccgcagggctacaccggcctcaactgtcagaatctggtg
cgctggtgcgactcctctccctgcaaaaacggaggcaagtgctggcagaccaacaacctg
taccgctgcgagtgcaacagcgggtggacgggcctgtattgtgatgtccccagcgtatcc
tgtgatgtggcagcaaagcagcaaggcgtcgacatggtgcacctgtgcaggaactccggc
ctctgcgtggatacaggcaacacgcacttctgccgctgccaggctggctacaccggcagc
tactgcgaggagcaggtggacgagtgctccccgaacccctgccagaatggagctacatgc
acggactacctgggaggctactcctgtgagtgtgttgctggctatcacggagttaactgc
tcagaggagatcaatgagtgcctgtctcacccgtgccagaatggaggaacctgcatcgat
ctcatcaatacctacaaatgctcttgccccagagggactcaaggggtgcactgtgaaatc
aacgttgacgactgcagccccttctttgatcctgtcactctggggcccaagtgctttaac
aacggcagatgcatagaccgggtgggcggctacagctgcaactgcccacctggcttcgtg
ggggagcgctgcgagggggacgtcaacgagtgcctctccaacccgtgtgatgcgcggggg
acccagaactgcgtgcagcgcgtcaacgattacaagtgcgagtgcaggcaggggtatgca
ggccgtcgctgtgataccgtggtggatggctgtaagggtaaaccctgcaggaacggcgga
acgtgtgcagttgctagcaacactggctggggcttcatctgtaaatgccctcctgatttt
gacggcgccacttgtgaaaacgactcgcgcacctgtgggaacctgcgctgcctgaacggc
ggcacctgcatctccagccacatgagctccaggtgcatatgtgatcctgccttcacgggg
ccagactgccagtaccccatcagcagcccttgccattcaaaccaatgttacaacgggggc
acctgtgaatacttcagtgatgctcccccatatttccggtgcaaatgccctgcaaatttc
aatggcttatactgccacatcctggatttcgatttcccgggaggcatcggctgggacatc
cccccacacacaattgaggagaaatgtgagatacccgattgcgcgggtttcgctggcaac
aagatctgcgatgcgaagtgcaacaaccattcctgcggctgggacggaggggactgttcc
ctcaacttcaacgacccctggaagaactgctcccagtcgctggagtgctggaagtatttc
aacaacgagcggtgcgacaagcagtgcaacaactccgggtgtctgtacgacggctttgac
tgccagaaggtggaagggcaatgcaatcctctgtatgaccaatactgtaaagatcacttt
tcagacggtcactgcgaccaggggtgtaacaacgctgagtgtgaatgggatggtctggac
tgtgccaacaacatgcctgagaaacttgcagatggcactttggtagtggtggtcctgata
accccagagaacctgaagaacaactccttcaacttcctccgggagctcagccgcgtcctt
cacaccaatgtggtcttcaagaagaaccccaagggagagtacatgatcttcccatactac
ggcaatgaagaggagctgaaaaagcaccacatcaagaggtcgacggagaactggtcggac
atgcccagcgccgtcttcaacacaataaagacgtccctctcgtcgcgtgtcggtgaaagg
cagcggagagagctggatcagatggatatcagaggatccatcgtatacttggaaatcgac
aaccgccagtgcatccagtcctcctcgcaatgctttcagagcgcaactgacgtggcggct
ttcctgggtgccttggcctcacttggtaacctgaacatcccctacaaaatagaagccgtt
aaaagtgaaacagctgagccccagaggaactcccagctgtatcctatgtatgtggtggtg
gctgcacttgtcttgcttgctttcattggagtgggagtagtggtatctcgaaagcggcgc
agggagcatgggcagctctggttcccagaaggcttcaaagtgacagagtcaagcaagaag
aagcgacgagaaccacttggggaggattccgttggactgaaacccctgaaaaatgcttct
gatggcaccttgatggatgacaaccagaatgaatggggtgatgaagaaaccttggacact
aagaagttcaggtttgaggagcaggcgatgctgccagacatggacgaccagacagatcac
aggcagtggactcaacagcacctagatgcagccgacctgcgcatctcttccatggcaccc
accccaccgcaaggtgaaattgatgcagattgtatggatgtcaacgttcgagggcctgac
ggattcaccccgctcatgatcgcttcatgcagtggaggagggctggagactggcaacagc
gaagaggaggaggatgctcccgctgtcatctcggatttcatttaccagggtgccagcctg
cacaaccagacagaccgaaccggcgagacggcactccacctggccgcaaggtactctcgc
tccgatgctgccaaacgcctgctggaggccagtgcagatgcaaacatccaggacaacatg
ggcaggacgcccctccatgcagctgtctcagctgatgctcaaggagtcttccagatcctg
attaggaacagagcgaccgatttggatgcccgcatgcacgatgggaccacgccgctgatc
ttggcagctcgcttggccgtggagggcatgctggaggatctgatcaattgccacgcggat
gtcaatgcagtggatgacctaggcaaatcagcactgcactgggcagctgctgtgaataac
gtagaagctgccatggtgctgctgaagaacggtgccaataaagacatgcagaacaacaag
gaggagacaccgttgtttcttgcagccagagaagggagctacgaaactgccaaagtcctc
ctggatcactttgcgaaccgtgacataaccgatcacatggaccggctcccacgggacatt
gcgcaggaacgcatgcaccatgacattgtgcggctgctggacgagtataacctggtacgg
agccctccactgcataatggcccgctgggggcgcccaccctgtctcctccgctctgctct
cccaacagttacatcggcaacctgaaacccaacgtccaagggaagaaagctaggaagcca
agtaccaagagcctgagctgcaatagcaaagattccaaagacatcaaagccaggaggaaa
aaatcgcaggatgggaaaggttgccttctagatagctctagtgtgctgtcaccagtcgac
tccctggagtcgccccatgggtacctgtcggatgttgcttctcctccactgatgacatct
ccatttcagcagtccccttccatgcctctgaatcacctgccaggcatgcctgatgcccac
atgagtatcaaccatcttaacatggcgggaaagcaggatatggcaatgggcaactccagc
aggatggccttcgattcagtgcccccgcgtctctctcacctgcctgtatccagccccagc
acagtcatgagcagtgcaccgatgaatttcactgtaggcggggctgccagcctgaacggg
cagtgcgactggctaacaaggctgcaaaatgggatggtccagaaccagtataatccaatg
agaagcaacatccagcccggggctcaccagcaaacccaagcccttcaacatggcatgatg
acctccctgcacaacggcatgcccaccactactttgtcacagatgatgagctaccagccc
atgcctaatacaaggctggcctcccagccacatttgatgcaggccccgcagttgcaacag
atccaacagcagcagaatttacagcagcagctgcaacagcaaaatctgcaacagcagcaa
catcacaataccagctcaaaccccaatgcccacattagccaaaacttcctcagtaacgag
ctaaaccagtcagacatgcagcaggtgagcagcactaccatgaccgtgcacactattttg
cctcaagagacccagatcctatcaacgtctctaccctcctccctcacacaacccatgacc
accacacagtttttaactccaccctctcaacacagttactcctcccccttggacaataca
cccaatcaccagcttcaggtgccagaccatcctttcttaacaccttccccggagtcaccg
gaccaatggtcaagctcgtcacctcattccaacatatctgattggtcagaggggatctcc
agccctcctacgagtatgcagtcacagataggacacatcccagaagccttcaagtaa
DBGET
integrated database retrieval system
