Trachemys scripta elegans (red-eared slider): 117889389
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Entry
117889389 CDS
T07347
Symbol
TNC
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04510
Focal adhesion
tst04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117889389 (TNC)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117889389 (TNC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117889389 (TNC)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117889389 (TNC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_2
EGF_Tenascin
Fn3_Dep-1_2nd
Ig_DSCAM-DSCAML_C
EGF
hEGF
Pur_ac_phosph_N
NDNF
Fn3_Dep-1_1st
Motif
Other DBs
NCBI-GeneID:
117889389
NCBI-ProteinID:
XP_034649379
LinkDB
All DBs
Position
17:complement(9151186..9247090)
Genome browser
AA seq
1869 aa
AA seq
DB search
MGLPMQVLTCAIIALLHHHVNGGLIKRIIRQKRETGLNVTLPEDNQSVVFNHVYNINVPM
GSLCSVDLDSANEDTDLKSQVEPSKTYQEHTVNEGNQIVFTHRINIPRRACGCAAAPDIK
DLLSRLEELEGLVSSLREQCSSSAGCCPSGLTAEGQVDTTPYCSGRGNYSSEHCGCICEP
GWKGPNCSEPECLNNCNNKGRCVNGKCICDEGFTGEDCSQLTCPNDCSDQGKCMNGVCLC
FEEYTGEDCSEELCPVACSEHGKCVNGRCVCDEGFTGEDCSEPLCLNNCNNRGRCVEKEC
VCNEGYTGEDCSELICPNDCYDRGRCVNGTCYCDEGFTGEDCGELTCPNNCNNNGRCNNG
LCICNEGFVGDDCSERRCPKDCNKRGRCVNGKCVCNEGFAGAACGQVKCPKDCNKRGRCV
NGQCVCQEGFMGEDCSELRCPGDCSNRGRCVNGRCECDEGFTGEDCSQLKCPNDCHNRGR
CVNRQCVCNEGFIGEDCGELRCLNDCNNRGHCVNGQCVCEEGFVGEDCGELRCPNNCNER
GRCINGQCVCDEGYMGEDCAELRCPNDCNNRGRCVNGLCECDNGFTEMDCSQQRCPSDCN
NRGRCINGQCLCEEGFGGVDCSKRSCPNNCNDMGRCVDGQCICDDGYEGDDCSNVSPPSD
LTVTDVTDKTVNLEWKNENLVNEYFITYVPTSVGGLELQFRVPGNETSATIRELEPGVEY
FIRVFAILKNKKSIPISARVATYLPAPEGLKFKSVRETSVQVEWEPLNISFDGWELVFRN
MKEEDNGDITNSLTRPETSYMQPGLAPGQQYNVSLHVVKNKTRGPGLSRVFTTKLDGPSQ
IEARDVTDTTALITWLKPLAEIDDIELTYGPKDVPGDRTTIDLSEDESQYSIGNLKPHTE
YEVTLISRRRDMASDPVKETFVTGLDAPKNLKRLSQTDNSITLEWKNSQASIDNYRIKFA
PISGGDHAEITVPRSNQATTKTTLTGLRPGTEYGIGVTAVKQDKESTPATINAATDLDNP
KDLVVGDKTEMTLSLRWRRPLAKFDHYRLTYLNPSGRKNEIEIPADSTSYILRGLEPGTE
YTITLVAEKGRHKSKPTIVKESTEEEPELGKLTVSKVRWDGFQLNWTAAEGAYETFVIQV
QDPNNTEETWNLTVPGSLRFVTVTGLKANMPYTVTLYGVIQGYRTKPLSVNTTTAAEPEV
GELMVSSITPESFHLSWTAPDEAFKTFTIEIIDSSRLLEPMEYNISGNLRTAQISGLSPK
TDFIVYLSGSTGDFRTKTISAAATTEAEPEVDNLLVSDATPGGFRLSWTADDGVFDSFVL
KIRDTDRQSDPRELIVPGHERTQDITGLKEGTKYDIELYGLISGRRSQPINAVATTAVGS
PKAISFSDITENSATVSWSPPRTRVESFRISYVPITGGTPNVVTVDGTNTRTKLVKLIPG
VDYTVSIISIKGFEESEPVSGILTTALDSPSGLVAVNITDSEALAVWQPAIATVDNYIIS
YIAEDEPEVTQTVSGNTVEYDLNGLRPATEYILRIYAVKGPQKSETVFTKFTTGMDAPRD
LSAIEVQSETAVLSWRPPRASVTGYLLIYESINGKVKEVILGPEATSYSLSELNPSTQYT
VKLQALNRALKSKRIQTIFTTIGLLYPYPRDCSQALLNGESASGLYTIYTNGNKSQPMEV
YCDMTSDGGGWIVFLRRHNGNEDFYRNWRTYAAGFGDPKDEFWIGLENLHKITSQGQYEL
RVDLRDKGETAYALYDRFSVGDSKTRYRLKVDGYSGTAGDSMTYHNGRSFSTFDKDNDAA
ITNCALSYKGAFWYKNCHRVNLMGRYGDNSHSQGINWFHWKGHEYSIQFAEMKLRPISFR
NLEGRRKRA
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atggggcttcccatgcaggttttgacctgcgccatcatagctttgctacaccaccatgtc
aacggtgggctcatcaagagaattatccggcagaagcgggagaccgggttaaacgtgacc
ttgccagaggataaccagtctgtggtctttaaccacgtctacaacattaacgtacccatg
ggctccctctgctcggtggacttggactcagctaatgaggacacggacctgaagtcccag
gttgagccgagcaagacctaccaggagcacacggtgaatgaggggaaccagattgtcttc
acacatcgcatcaacatcccccgccgggcctgtggctgtgcggctgctcctgacatcaag
gatctgctgagcagactggaggagctggaggggctggtatcctctctacgagagcagtgc
tccagcagcgctggctgctgccccagcggcctaacagcagaaggtcaagtggacaccaca
ccatattgtagcggacgagggaactacagcagtgagcactgtggttgcatttgtgaacct
ggctggaaaggacccaactgctcagaaccagaatgcctgaacaattgcaacaacaaaggc
cgctgtgtcaatggcaaatgtatctgtgatgagggcttcactggggaggactgcagccag
ctcacctgccccaatgactgcagtgaccaaggcaaatgcatgaatggtgtttgtttgtgc
tttgaggagtacaccggtgaggactgcagtgaagagctttgcccggtggcatgcagtgag
catggaaagtgtgtgaacgggcggtgtgtgtgcgacgaaggcttcactggcgaggactgc
agtgagccgctgtgcctgaacaactgcaataaccgtgggcgctgcgtggagaaagagtgt
gtgtgcaacgaaggctacacgggtgaagactgtagcgagcttatctgccccaatgactgc
tacgaccgtggccgttgtgtcaacgggacctgctactgtgatgagggcttcaccggggag
gactgcggggagctgacctgccccaacaactgcaacaacaacggccgctgcaataatgga
ctgtgcatctgtaatgagggctttgtgggcgacgactgtagtgagcggcggtgccccaag
gactgcaacaagcgggggcgctgcgtcaacgggaagtgcgtgtgcaacgagggctttgct
ggtgccgcctgtggccaagtgaagtgccccaaagattgtaacaagcggggccgctgcgtc
aacgggcagtgtgtgtgccaggagggcttcatgggcgaagactgcagtgagttgcggtgt
cccggtgactgtagcaaccggggccgctgcgtcaacgggcggtgcgagtgtgacgagggc
ttcacaggcgaggattgcagccagctgaagtgccccaatgactgtcacaaccgcgggcgt
tgcgtcaacaggcagtgcgtgtgcaacgagggcttcatcggcgaggactgcggggagctg
aggtgcctcaatgactgtaacaaccgggggcactgcgtcaacgggcagtgtgtgtgtgaa
gagggcttcgtgggcgaggactgcggagagctgaggtgtcccaacaactgtaatgagcgc
gggcgctgcatcaatgggcagtgcgtgtgcgacgaggggtacatgggggaggactgtgct
gagctgaggtgccccaatgactgcaacaaccgggggcgctgcgtcaacgggctgtgcgag
tgtgacaatgggttcacagagatggactgtagccaacagcggtgccccagtgactgcaac
aaccggggtcgctgcatcaacggacagtgcctgtgcgaagagggctttggaggagtggac
tgcagtaagcgatcctgccccaacaactgcaatgacatgggccgctgcgttgatgggcaa
tgcatttgtgatgatggatacgaaggggatgactgctccaatgtgtcccctccaagcgac
ttgacagtgacagacgtgacagataagactgtcaatctggaatggaagaatgagaatcta
gtcaatgagtatttcatcacctatgttcctaccagtgttggtggcctagaactgcagttc
agggtgcctggaaacgagacatctgctaccatccgtgaactggagcctggcgtggaatac
tttatccgtgtgtttgccatcctaaagaacaagaagagtattccaatcagtgccagggtg
gcaacctatctacctgctcctgaaggcctgaaattcaaatccgtcagggagacatctgtg
caggtggagtgggagcctctgaacatttcatttgatggctgggagctcgtcttccgaaat
atgaaagaggaagataatggggacataaccaacagtttgacgagaccagagacatcgtat
atgcagccaggtctggcaccaggacaacagtataacgtatccctgcatgtagtgaaaaac
aaaaccagaggacctgggttgtctagagtgtttaccacaaagcttgatggcccgagccag
attgaggcaagagatgtgacagacaccacagctttaatcacatggttaaaacctttggct
gaaatcgatgacatagagctcacctacggacccaaggatgttccaggggacaggacaacc
attgacctctctgaggatgaaagccagtattccattgggaatctgaagccacacacagag
tatgaggtgacgctgatctctcggcgcagggacatggctagcgaccctgtgaaggaaacc
tttgtcacaggcttggatgcaccaaagaacctgaagcgattgtctcagacagacaacagt
atcaccttggagtggaagaacagccaagccagcattgataactacagaatcaagttcgct
cccatctcaggtggagaccatgctgagataactgtgccaaggagtaaccaggccacaacc
aagacaacgctcacaggtctgaggcctggaacagaatatggcattggagtgacagcagtg
aagcaggacaaagaaagtactcccgctacgatcaatgctgcaactgatctggataatccc
aaggacttggtggtcggtgataaaactgaaatgaccctctccctccgctggagaagacca
ctggccaagtttgaccactaccgcctcacttacttgaacccctctgggaggaagaatgaa
attgagataccagcagatagcacctcttacatcttgcgagggctggagcctggtacagaa
tataccatcaccctagtggcagagaaaggcaggcacaagagcaaacccacaattgtgaag
gagtctactgaggaggaacctgagctcggaaagttaacagtatcgaaggttagatgggat
ggtttccaactcaactggacagcagcagaaggggcctatgagacttttgtcatccaggtg
caggatccaaacaatacagaagaaacttggaatctcacagtcccaggcagcctgcgcttt
gtgactgttactggcctcaaggctaacatgccctacactgtcaccctttatggtgtgatt
cagggctacaggaccaaacccctttctgttaacaccacaacagcagcagaacccgaagtt
ggtgaactaatggtttccagcattacccccgaaagcttccacctttcctggacagccccg
gatgaggccttcaagacctttaccattgaaattattgattctagcaggttactggagccc
atggagtacaacatttcaggcaacttaaggactgctcaaatctcagggctttcccccaaa
actgattttattgtctacctctctgggagcacgggtgatttccgcacaaagacaataagt
gctgcagctactacagaagcagaacccgaggttgacaaccttctggtttcagatgctact
ccaggtggcttccgtctgtcctggactgcagatgatggggtcttcgacagctttgttctt
aaaatcagggataccgacaggcagtctgacccacgggaactaattgttccaggccatgaa
cgcacccaagatataacagggctgaaggagggtactaagtatgacattgaactctatgga
cttatcagtggacgacgttcccagcccataaatgcagtagctaccacagctgtgggatcg
cccaaggcaatcagtttctctgacattactgaaaactcggccacggtcagctggtcgcct
ccaaggacccgagtggagagcttccggatttcatacgtccccataacaggaggtactccc
aatgttgtgacggtggatggaaccaatactaggaccaagctggtgaaactgatcccaggt
gtagactacactgtcagtataatatccatcaaagggtttgaagaaagcgagccggtctct
ggaattctgactacagctctggacagcccatcaggactggtagcggtgaatatcacagac
tctgaggccttggcagtctggcagccagcgattgccacagtggacaattacatcatctcc
tacattgctgaggatgagccagaagttactcagacggtgtctgggaacaccgtggaatat
gacctcaatggccttcgtcctgcaaccgaatatatcctgaggatctatgcagtaaaggga
ccacagaagagtgagacagtcttcaccaaattcactacaggcatggatgcgccaagagat
ttgagtgccattgaggttcagtcagaaacagcagtgctgtcgtggaggcctccacgggct
tctgtcaccggctatctccttatctacgagtctatcaatggcaaagtcaaggaagtcatc
ttgggacctgaggcaacttcctacagcctgtctgagctaaacccgtccacccagtacaca
gtgaaactgcaggcactgaacagagccctgaagagcaagagaatccagaccatcttcacc
acaattggacttctctatccttaccctagagactgctcccaagctctgttgaatggagaa
agtgcctctggactttacaccatttatacgaatggaaacaagtcacagcctatggaggtg
tattgtgacatgacctctgatggaggtggatggattgtgtttctgaggcgccataatgga
aatgaggatttctacaggaactggaggacttacgctgctgggtttggggatcccaaggat
gaattctggataggtctggagaacctccacaaaatcacttcccagggccagtatgagctg
cgtgtggatctgcgagacaagggcgagacagcttacgctctctatgacaggtttagcgtg
ggagactccaagacccgttatcggctaaaagtggatggatacagtggaacggcaggtgac
tccatgacctatcacaatggacggtccttctccacctttgataaggacaatgacgctgcc
atcacaaactgtgctttgtcctacaaaggtgctttctggtacaagaattgtcaccgagtc
aatctgatgggcagatacggtgacaacagccacagtcagggcattaactggttccactgg
aagggccatgaatactccatccagtttgcagaaatgaagttgagacccatcagcttccgg
aatctagaaggcagacgaaagagagcataa
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integrated database retrieval system
