Trachemys scripta elegans (red-eared slider): 117889392
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Entry
117889392 CDS
T07347
Symbol
CACNA1B
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04010
MAPK signaling pathway
tst04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117889392 (CACNA1B)
04020 Calcium signaling pathway
117889392 (CACNA1B)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tst04040
]
117889392 (CACNA1B)
Ion channels [BR:
tst04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117889392 (CACNA1B)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Tachystatin_A
Motif
Other DBs
NCBI-GeneID:
117889392
NCBI-ProteinID:
XP_034649396
LinkDB
All DBs
Position
17:7573363..8077545
Genome browser
AA seq
2401 aa
AA seq
DB search
MARFGDDLPTRYGGGGPAGAGRGGSRQGGPPPGQRMYKQSMAQRARTMALYNPIPVKQNC
FTVNRSLFIFSEDNVIRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPEDDKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTGILATAGTDFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFAIIGLEFYMGK
FHKTCFSNETGEEVGDFPCGEDPPARQCENGTTCRKYWPGPNYGITNFDNILFAVLTVFQ
CITMEGWTDILYNTNDAAGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVENR
RAFLKLRRQQQIERELNGYLEWIFKAEEVMLAEEDKNAEEKSPLDGRAASEGPIQQGTAP
AETGGSSYNMLKRATIKKSKNDLIHAEEGEDHFTDICSVGSPFARASLKSGKNESSSYFR
RKEKMFRFFIRRMVKAQSFYWIVLCVVTLNTLCVAMVHYDQPEGLTTALYFAEFVFLGLF
LTEMSLKMYGLGPRNYFHSSFNCFDFGVIVGSIFEVIWAAVKPGTSFGISVLRALRLLRI
FKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFQDETPTTN
FDTFPAAILTVFQILTGEDWNAVMYHGIVSQGGVHSGMFSSIYFIVLTLFGNYTLLNVFL
AIAVDNLANAQELTKDEEEMEEATNQKLALQKAKEVAEVSPMSAANISIAAFVKQTRGTV
SRSSSVSSVNSPKQQNSSKSKSVWEQRTSQIRMHNFRASCEALYNELDPEERVRYATTLH
IRPDMKTHLDRPLVVEPRTEGRNNVGKLSPVDVQETEQAKATSADNAEVPRKHHRHRDKD
KMGEQEKSDVAKDENGESGTNNKEERHRQHRSRSKEAEGGSKEGKSERNRSQEGGKRHHR
RGSVEEGAEKEYRRHRPHRHSAERQAKEGNGAANGARSERRSRHRGGSRSGNREGDPGSK
GENGEEPHRRYKIRHRALSTYESVEKENGEKEGEAGEKDLKNHQPRETQCEIEAGGGVSV
VPVHTLPSTYLQKVPEQPEDADNEKNVTRMTQPPLDKTTTVNIPVTITAPPGETTVIPMN
NVEFESKTEEKKDMEIEDLTKNGPKPILPYSSMFILSPTNPIRRLFHYIVNMRYFEMVIL
IVIALSSIALAAEDPVQAESPRNDALKYLDYIFTGVFTFEMVIKMIDLGLLLHPGSYFRD
LWNILDFIVVSGALVAFAFSSFMGGSKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFD
CVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKELEKDCRGQYLDYEKSE
VEAQPRQWKKYEFHYDNVLWALLTLFTVSTGEGWPTVLKHSVDATYEEQGPSPGYRMEMS
IFYVVYFVVFPFFFVNIFVALIIITFQEQGDKVMSECSLEKNERACIDFAISARPLTRYM
PQNKQSFQYKMWKFVVSPPFEYFIMVMIALNTIVLMMKFYGAPDAYEEMLKCLNIVFTSM
FSMECVLKIIAFGVLNYFRDAWNVFDFVTVLGSITDILVTEIAETDNFINLSFLRLFRAA
RLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDDTSIN
RHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSNRACDKLSGLTKNECGSDFAYFYFVSF
IFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRISYTDMYE
MLRHMSPPLGLGKKCPARVAYKRLVRMNMPISDPDLTVHFTSTLMALIRTALEIKLASAG
VKQHQCDAELRKEISLVWPNLSQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKNSR
EQVHQPPGGLCQVPSNKTLFPLLTPTKTGPVSLFHPLKATLEQTQPLVFNHAKAFLRQKS
CTSLNNGGTLPAPESGIKESVSWGTQRTQDVFYETRTPAFERGHSEEIPIERTSKQVVEM
REISPTLANGEHQPGLESQGRAASMPRLAAETQVREGGFTGNGKLTPIPDTSPMKRSIST
LTPQRPHAMHLYEYSLERMPPDQAHHHHHHRCHRRRDKKQKSLDRSPNQLADGDAGEASS
KDKKQERGRSQERKLHSSSSSEKQRFYSCDRYGSRDRSQPKSADHSRPTSPNGGLEPGPH
RQGSGSVNGSPLLSTSGASTPCRGRRQLPQTPLTPRPSITYKTANSSPVHFTSFQTSLPA
FSPGRLSRGLSEHNALLHGDSQSHSRSPVARIGSDPYLGHRDDSDSPYRVVPEDTLTFEE
AVATNSGRSSRTSYVSSLTSQSHQIRRVPNGYHYTLGLSTGPGTCARTRSYYHEADEDDW
C
NT seq
7206 nt
NT seq
+upstream
nt +downstream
nt
atggctcggttcggagatgatctgcccacccgctatggaggcggcggtccggccggggct
ggacgagggggcagccggcaaggtggccctccacccggccaaaggatgtacaagcagtcg
atggcccagagagccaggacgatggctctctacaaccccatccccgtcaaacagaactgc
ttcaccgtcaacagatccctcttcatcttcagcgaggataacgttattcggaaatacgcc
aagaggataaccgaatggcctccatttgaatacatgattttagcgacaatcatagccaac
tgcattgttctggctttggagcagcatctaccagaggatgacaagacacccatgtcggag
agattggatgatactgagccgtactttattggaatattttgttttgaagctggtataaaa
atcatcgctctggggtttgtttttcacaaaggctcttatctccgaaacggctggaacgtg
atggattttgtcgttgtcctcacagggattctagccaccgctgggactgattttgaccta
cgaaccctgcgagctgttcgggtattgagacctttgaagttggtgtcaggaatcccaagt
ttgcaggttgtcctcaagtccatcatgaaggccatggtgcccttgctccagattgggctg
cttctcttctttgctatcgtgatgttcgccatcattgggctggagttctacatggggaag
tttcataaaacctgcttctcaaacgaaacaggtgaggaggtgggagattttccttgtgga
gaggatcccccggccaggcaatgtgagaatggaaccacatgcaggaaatactggccaggc
cccaactatggaatcaccaactttgacaatattctgtttgctgtgctaactgtcttccag
tgcatcaccatggagggctggactgacatcctctacaataccaatgatgccgcaggaaat
acctggaactggctttacttcatccctctcatcatcattggctctttcttcatgctcaac
ctggtgctgggcgtcttatcaggcgagttcgccaaagagcgcgagagggtggagaaccgc
cgggccttcctgaagctccgtaggcagcagcagatcgaacgggagctgaacgggtacttg
gagtggatcttcaaggcagaggaggtgatgctggcagaagaagacaagaatgccgaagag
aagtcccccctggacgggagggctgcctccgaagggcctattcagcaaggcacagcaccg
gcggagactggcggcagcagctacaacatgttgaaaagagctacaataaagaagagcaaa
aacgacctgattcatgctgaagagggggaggaccatttcacagacatttgctccgttggg
tctccgtttgcccgggccagtctaaagagcggaaagaatgagagctcctcgtatttccgg
aggaaggagaagatgttccggttcttcatccggcgcatggtgaaagcacaaagcttctac
tggatcgtcctgtgtgtcgtcaccctgaacactctgtgcgtcgccatggtgcattatgac
cagccggaggggctcaccactgctttgtattttgcagagtttgttttcctgggtctgttc
cttactgagatgtccttgaagatgtacggactggggccaagaaattacttccactcctcg
ttcaactgcttcgactttggggtgatagtggggagcatttttgaagtgatttgggcagca
gtgaagccgggtacctcatttggcatcagtgtattgagagctcttcgactgctgaggatt
ttcaaagtaaccaaatactggaactccctaaggaatctggtggtctccttgctgaactcc
atgaaatccatcatcagtttgcttttcctgctcttcctgttcattgtggtgtttgctctg
ctgggaatgcagctctttggaggacagtttaatttccaagatgaaacaccgaccacaaac
ttcgatacgttccctgctgccatcctcactgtgttccagatactgactggcgaagactgg
aatgcagtgatgtatcatgggatagtatcacaaggtggggtccactcaggaatgttctct
tccatttacttcatcgtcctgacgttgtttggtaactacacactcctgaatgtcttcttg
gctattgctgtcgacaatcttgcgaatgcacaagagctaaccaaggatgaagaggagatg
gaagaggctaccaatcaaaagcttgcactccagaaggccaaggaggtagcagaagtcagt
cccatgtctgcagctaatatttccatagcagcttttgtaaagcaaactcgaggtactgta
tctcgcagctcgtcagtctccagcgtaaattcacccaaacagcagaactcctccaaatcc
aagtccgtttgggaacagaggaccagccagatccggatgcacaatttccgggccagctgc
gaggcgctgtacaatgagctcgatccggaggagcgggtgcgctatgctaccaccctccac
atccggccagacatgaagacccatttggatcggcctctggtggtagagccgaggaccgaa
gggcggaacaacgtcggtaagctaagcccagtggacgttcaggagacagagcaggccaag
gccacctctgctgacaatgcagaagtgccacggaagcaccaccggcatcgggataaagac
aagatgggagagcaggagaagagcgacgtggccaaggatgagaacggggagtctggcacg
aacaataaggaggaacggcacaggcagcacagaagccgcagcaaagaggcagaggggggc
agcaaggaaggaaaaagcgagcgcaacagaagccaggaagggggtaaaaggcatcatcgt
cgaggctccgtggaggaaggggctgagaaggagtaccggcggcaccggcctcaccggcac
tcagcggagagacaagcaaaggaaggcaatggggcagccaacggtgccagaagcgagcgg
cgttcacgtcaccgaggagggtcaaggtcagggaaccgggaaggtgatcccggctcgaaa
ggagagaatggggaagagccccacagacgatacaagatccggcacagagctctgtcgacg
tatgagtcggtggagaaggagaatggggagaaggaaggagaggctggggagaaagatctt
aagaaccatcaacccagggaaactcagtgtgagatagaggccggcggtggcgtgagcgtc
gtcccagttcataccctgcccagcacctacctgcagaaagtacctgagcagccagaagat
gctgacaacgagaagaatgtgacacggatgactcagccaccactggacaaaaccaccact
gtgaacatccccgtcaccatcaccgcgcctccaggggagaccactgtcataccaatgaac
aacgttgaatttgaaagtaaaacggaagagaagaaagatatggagattgaggacttgaca
aaaaatgggcctaagccaatcctgccttatagctccatgtttatcttaagccctacaaac
ccaatccgacgcctgtttcattacattgtgaacatgcgctactttgagatggtcatcctc
atcgtcatagcactgagcagcattgccctggctgccgaagaccctgtccaagctgagtct
ccaaggaatgatgcgctgaagtatctggattatatatttacgggtgtctttaccttcgag
atggtgataaagatgattgacctggggctgctgcttcatcctggctcctatttccgtgac
ctgtggaacatcttggattttattgtggtcagtggggccctggtggcatttgccttctcg
agtttcatgggaggaagcaaaggcaaagacatcaacacaatcaagtcactgcgagtcctg
cgagtcctaagaccactgaagactatcaagcgtctgcccaagttaaaggctgtctttgac
tgcgtggtgaattccctgaagaacgtcctcaatatcctaattgtttacatgctcttcatg
ttcattttcgctgtcattgctgtgcaactcttcaaaggcaaattcttctactgcacggat
gagtccaaggagctagaaaaggactgcaggggtcagtatctggattatgagaagagtgag
gtggaggcgcagcccaggcagtggaaaaagtatgagtttcactatgacaatgtcctctgg
gctctgttaacgctgttcactgtctccacaggagaggggtggccaactgtattgaagcat
tcggtggatgctacatatgaggagcagggtcccagccctggttatcgaatggaaatgtcc
atcttttatgtggtgtactttgttgtcttccccttcttctttgtgaatatatttgtggcg
ttaatcatcatcaccttccaggagcaaggagataaagtgatgtcggaatgcagtctagaa
aaaaacgagagggcctgcatagacttcgccataagtgccaggccactgacccgctacatg
cctcaaaacaagcagtcttttcagtacaagatgtggaagtttgtggtgtcccctcccttt
gaatattttatcatggtcatgattgcactcaatactattgtgctgatgatgaagttctat
ggtgctccagacgcatatgaagaaatgttgaaatgcctgaatattgtatttacatctatg
ttttcaatggaatgcgttttgaagatcattgcctttggtgtactgaattatttccgagat
gcctggaacgtctttgattttgtaacagttttgggaagtattactgatattttagtaaca
gagattgcggaaacggacaacttcatcaacctcagcttcctgcggctcttcagggcagcc
agacttatcaaacttcttcgccagggttacaccatccgcattctgctctggacatttgta
cagtcttttaaggccttgccttatgtgtgtctcctcattgcgatgctcttcttcatctat
gccattatcggcatgcaggtatttggaaacattgcactagatgatgatacctcaattaat
cgacacaacaacttcagaactttcttgcaagccctgatgctattgttcaggagtgccacc
ggggaagcttggcacgagatcatgctgtcctgcctcagtaaccgagcctgcgacaaactc
tccggcctcaccaaaaacgaatgtggcagtgactttgcctatttttactttgtctctttc
atcttcctttgttcctttctgatgttgaacctgtttgtggctgtaatcatggacaacttt
gagtacctgacacgagactcttccatcctaggaccccatcacctggatgagttcattcgg
gtctgggctgaatacgacccagctgcctgcgggcgcatcagttacactgacatgtatgag
atgctgagacacatgtccccacctctaggcctgggaaagaaatgccctgctcgagttgcc
tataagcgcctggtgcggatgaacatgccgatctcggacccggacttaacggtccacttc
acttccaccctgatggccttgatccggaccgctctagaaatcaaactcgcgtcagcgggt
gtgaagcagcaccagtgtgatgctgagctgaggaaagagatctctctggtttggcccaat
ctgtcccagaagacattggacttgttggtgcctcctcataaacctgacgaaatgactgtg
gggaaggtctatgccgctctcatgatattcgacttctacaagcagaataaaaacagcagg
gaacaagtgcaccagccacctggaggtctttgccaggtacccagcaacaagacgctgttc
cctcttctcactcccaccaagactggaccagtgtcgttgttccaccccttgaaagcaacc
ctggagcaaacccagcctctggtgttcaaccacgctaaagcattccttcgccagaaaagt
tgcacctcactcaacaacgggggcacattgccagccccagagagtgggatcaaggagtct
gtttcgtgggggactcagcgcactcaggatgtgttttacgaaaccaggaccccagctttt
gaacgaggccactcggaagaaattcccattgagcggacaagcaaacaggttgtagaaatg
agagaaatcagccccaccctggccaacggagaacatcagcctggcctggagagccagggg
cgggcggcttccatgccgcgtctggccgccgaaactcaggtgagggagggaggctttact
ggcaatggaaaacttacacccatcccagacaccagccccatgaagcgctccatctccacg
ctgacgccgcagcgcccgcatgccatgcacctgtacgagtattccctggagcgcatgccc
ccggaccaggctcatcaccaccatcaccatcgctgccatcgacggagagacaagaagcag
aagtcgttggacaggtcacccaaccagctggccgatggggatgccggtgaggcgtcttcc
aaggataagaagcaagaacgaggcaggtcccaagagagaaagctgcactcctcctcttcc
tccgaaaaacaacgcttctactcctgcgaccgctacgggagccgggaccgttctcagccc
aaatcagctgatcacagcaggcccacctcgcccaatggggggctggaaccaggcccccac
agacagggtagtggttcagttaatgggagccccttgctgtcgacatctggtgctagcacc
ccgtgccgcgggcggaggcagctcccgcagactccgctgaccccccgccccagcatcact
tacaagaccgccaactcctcacccgtgcacttcaccagtttccaaaccagcctgcccgct
ttctccccggggcgcctgagccgaggtttgtctgagcataatgcgttactgcatggggac
tctcagagccactcacgctccccggtggcccgcattggttccgacccctaccttggacac
cgcgacgacagtgacagcccgtaccgtgtcgtgcccgaggacacgctcaccttcgaggag
gctgtcgccaccaattcaggaaggtcctcaaggacttcttacgtctcgtccttgacttcc
cagtctcaccaaatccgcagggttcccaacggctaccactacacgttgggcctcagcacg
ggccctgggacatgcgccagaacccgtagctattaccacgaagccgatgaggacgactgg
tgctag
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integrated database retrieval system
