Trachemys scripta elegans (red-eared slider): 117889398
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Entry
117889398 CDS
T07347
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117889398 (RC3H2)
04121 Ubiquitin system [BR:
tst04121
]
117889398 (RC3H2)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117889398 (RC3H2)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117889398 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
zf-C3HC4_2
Xin
Motif
Other DBs
NCBI-GeneID:
117889398
NCBI-ProteinID:
XP_034649436
LinkDB
All DBs
Position
17:complement(22469129..22514550)
Genome browser
AA seq
1191 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQTVKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRALRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDATSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKISATVRTFPLLNKVGVNSTVSTTAGNVISVI
GSTETTGKMVPSSNGIANLESGVPQLIPRCAETSLRVLENVKKGGKSGASGQNASGSPTE
SLSENKICSPPKTPVSQAAATSAGGPNIGTEMNSLPPKSSPFVTRVPVYPPHSDNVQYFQ
DPRTQLSYEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSSNVPESSLPPASVPYADHYST
FPPRDQLNSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPQIYPRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSMACQPPNEQRTVPLPREPCGHLKTSYDDQLRRKPEQW
AQYHSQKTPLVSSTLPMATQSPTPPSPLFSVDFSTEFSESVSDLSGTKFEEDHLSHYSPW
SCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRAKEEDPIIPFSDG
PIISKWGAISRSSRTGYHTTDPIQATASQGSATKPISVSDYVPYVNAVDSRWSSCGSDST
ASARYIERERFIVTDLSAHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLD
EGSRLTLNLLSKEIDLRNGEADYIEDCADTKPDRDIELELSALDTDEPDGQGEQIEEILD
IQLGISSRDDQLLNGTTIENGHSLKKHQKEPLEQKRQSLGEDLVILEEQKAVLPVTSCFS
QPITGSFSNASCLPISTSVNVGSLILKSAHIMSEDKNDFLKPIANGKMVNS
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacggagtttctgtcctgtccaatctgctacaatgag
tttgatgagaatgtgcacaagcccatcagcttaggttgctcacacactgtctgtaagacc
tgcctgaacaagcttcatcgcaaagcatgtcctttcgaccagactgccatcaacacagac
atcgatgtgcttccagtaaactttgcacttctccagttagttggagcccaggtaccagat
catcagacagtaaagttaagtaacctaggagagaacaaacattatgaggtagcaaagaaa
tgtgttgaggatttggcactctacttaaagccactaagtggaggaaagggagttgctagt
ttgaatcagagtgccctgagccgtccaatgcaaaggaaactggtgacgctggtgaattgt
cagctggtggaggaggagggtcgtgttagagccctgcgggcagcacgctcacttggtgaa
agaactgtaacagaactgattttacagcaccagaaccctcagcaactgtctgccaatctc
tgggctgctgtcagggcacgaggatgccagtttctagggccagctatgcaagaagaggct
ttgaaacttgtgttactggcacttgaagatggctctgcactctcaagaaaagttttggta
ctttttgttgtgcaaagactagaaccaagatttcctcaggcatcaaaaacaagcattggt
catgttgtgcaactactgtatcgagcatcatgctttaaggtcaccaaaagggatgaagat
tcttctctgatgcagcttaaagaggaatttcggagttatgaggctttgcggagggaacat
gatgcccaaattgtccacattgccatggaagcaggacttcgaatatcaccagaacaatgg
tcttccctcctttatggtgacctggcacataagtcacacatgcaatccattattgacaag
ctccagtctccagaatcatttgcaaaaagtgtacaggagttgacaattgtcttgcaacgt
acaggtgatccagcaaacttaaacagacttaggcctcatttagagcttctggcaaacata
gatcctaatccagatgcaacttctccaacatgggagcagctggaaaatgcaatggtggcg
gtgaagactgtggtacatgggctagtggactttattcagaactatagtagaaaaggtcat
gaaacaccacagccgcaaccaaatagcaaatataaaacgagtatgtgccgagatctgcga
cagcaagggggatgtccacgaggaactaactgtacatttgctcactctcaggaagagctt
gaaaagtatcgtttgaggaacaaaaagatcagcgcaactgtgagaacattccctctccta
aataaagttggtgtcaacagcactgtctcaaccacagcaggaaatgtaatctctgtcata
ggaagcactgaaacaacaggaaagatggtgccgagttccaatgggattgcaaatctggaa
agtggtgttccccaattgattcctcgctgcgctgaaacctccttaagagttctggagaat
gtcaagaaggggggaaagtctggagccagtggtcaaaatgcctctgggtctcctacagaa
tcactatctgaaaataaaatctgttctccacccaagactcctgtaagccaggcagcagcc
acctcagctggtggtcctaatattggaacagagatgaattctctgcctccaaaatccagc
ccatttgtaaccagagtacctgtctaccctccacattctgataatgttcagtattttcaa
gatcccaggacacagttgtcctatgaagttccacagtacccccagacaggatactaccca
ccacctccaacagtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccagt
aatgttccagaatcctccctcccacctgcttccgtgccatatgccgatcattacagtaca
tttccccctcgagatcaactgaattctccttaccaacctcctcctccgcagccgtatgga
ccagttcctcctgtcccttctggaatgtatgctccagtgtatgacagcaggcgcatctgg
cgtccacagatctacccaagagatgacattattaggagcaattctttacctccaatggat
gtgatgcactcatctgtctatcagacatcattacgcgaaagatataattcattggatggg
tattactccatggcttgccaacctccaaatgagcagaggactgtgcctttaccaagggag
ccttgtggtcacttgaagaccagttatgatgatcagttaagacggaagccagagcagtgg
gcacaataccactctcaaaaaacgccgcttgtgtcctcaacccttcctatggcaacacag
tctccaacaccaccttctcctctcttcagtgttgacttcagcacagagttctcggagagt
gttagtgacctgagtggtactaaatttgaggaagaccatctttcacactactcaccctgg
tcctgtggtactatcggttcctgcataaatgccatcgactcagagcccaaggatgtaatt
gccaattcaaatgctgtgttaatggatttggacagtggagatgttaagaggagagttcat
ctatttgaaactcaaagaagggcaaaggaagaagatcctataattccctttagtgatgga
ccaatcatctccaagtggggtgcaatctccagatcatcccgcacaggttatcacacaaca
gatcctattcaggccactgcttcccaaggaagtgctactaagcccatcagtgtatcagat
tatgtcccttacgtcaatgctgttgattcaagatggagttcctgtggctcagattctact
gcatcagcacgctatatagaacgggaaagattcatagttactgatttatctgctcacaga
aagcattctagtactggagatctactgagcattgaactacaacaagccaaaagtaattca
ttgttacttcagagagaggctaatgcactagccatgcaacagaagtggaattccctagat
gaaggcagtcgccttaccttaaatcttttaagcaaggaaattgatttgaggaatggtgag
gctgactatattgaagactgtgcagacacaaagccagatcgggacattgaattagagctt
tccgcccttgatactgacgaacctgatgggcagggtgaacaaatagaggagattctggac
atacagctaggtatcagttctcgggatgatcagctgctcaatggaacaactatagagaat
ggacattcactcaagaaacaccaaaaggaacctttggagcagaagagacaaagtttaggt
gaagaccttgtgattctggaggagcagaaagcagtcctgcccgtaacttcttgcttcagc
cagcctatcacaggatcctttagcaatgcaagctgcctgcccatcagcacatcagtcaat
gttggcagcctcattttgaaaagtgctcacattatgtctgaggataaaaacgacttttta
aagcccattgcgaatggcaaaatggttaacagctga
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integrated database retrieval system
