Trachemys scripta elegans (red-eared slider): 117889412
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Entry
117889412 CDS
T07347
Symbol
SPTAN1
Name
(RefSeq) spectrin alpha chain, non-erythrocytic 1 isoform X1
KO
K06114
spectrin alpha, non-erythrocytic (fodrin)
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04210
Apoptosis
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117889412 (SPTAN1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117889412 (SPTAN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tst04812
]
117889412 (SPTAN1)
Cytoskeleton proteins [BR:
tst04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
117889412 (SPTAN1)
Intermediate filaments
Intermediate filament-binding proteins
117889412 (SPTAN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
EFhand_Ca_insen
SH3_1
EF-hand_1
EF-hand_7
EF-hand_6
SH3_9
EF-hand_8
SH3_2
EF-hand_5
SH3_3
SH3_10
Tetrabrachion
SCO1-SenC
Vip3A_N
Motif
Other DBs
NCBI-GeneID:
117889412
NCBI-ProteinID:
XP_034649472
LinkDB
All DBs
Position
17:13554252..13626609
Genome browser
AA seq
2508 aa
AA seq
DB search
MLSFRKLKVQKMDPSGVKVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFF
QRDADELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIIKLDETGNQM
INEGHFASETIRTRLQELHRLWELLLEKMREKGIKLLQAQKLVQYLRECEDVLDWINDKE
AIVTSEELGQDLEHVEVLQKKFEEFQTDLAAHEERVNEVNQFAGKLIQEQHPEEELIKSK
QDEVNAGWQRLKGLALQRQGKLFGAAEVQRFNRDVDETISWIKEKEQLMASDDFGRDLAS
VQALLRKHEGLERDLAALEDKVKALCAEADRLQQSHPQNASQIQVKREELIANWEQIRTL
AAERHARLNDSYRLQRFLADFRDLTSWVTEMKALINADELANDVAGAEALLDRHQEHKGE
IDAHEDSFKSADESGQALLAAGHYASDEVREKLTILSDERTALLELWELRRQQYEQCMDL
QLFYRDTEQVDNWMSKQEAFLLNEDLGDSLDSVEALLKKHEDFEKSLSAQEEKITALDEF
ATKLIQNNHYAKEDVATRRDALLSRRNALHERAMYRRAQLADSFHLQQFFRDSDELKSWV
NEKMKTATDEAYKDPSNLQGKVQKHQAFEAELSANQSRIDALEKAGQKLIDVNHYASDEV
AARMNEVISLWKKLLEATELKGIKLREANQQQQFNRNVEDIELWLYEVEGHLASDDYGKD
LTNVQNLQKKHALLEADVAAHQDRIDGITIQARQFQDAGHFDADNIKKKQEALVARYEAL
KDPMVARKQKLADSLRLQQLFRDIEDEETWIREKEPIAASTNRGKDLIGVQNLLKKHQAL
QAEIAGHEPRIKAVTQKGNAMVEEGHFAAEDVKAKLNELNQKWESLKAKASQRRQDLEDS
LQAQQYFADANEAESWMREKEPIVGSTDYGKDEDSAEALLKKHEALMSDLTAYGSSMQAL
REQAQSCRQQVAPTDDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV
NDRQGFVPAAYVKKLDPAQSASRENLLEEQGSIALRQEQIDNQTLITKEVGSVSLRMKQV
EELYHSLLELGEKRKDMLEKSCKKFMLFREANELQQWINEKESALTNEEVGADLEQVEVL
QKKFDDFQKDLKANESRLKDINKVANDLESEGLMAEEVQAVQQQEVYGMPRDETDSKTAS
PWKSARMMVHTVATFNSIKELNERWRSLQQMAEERSQLLGSAHEVQRFHRDADETKEWIE
EKNQALNTDNYGHDLASVQALQRKHEGFERDLAALGDKVNSLGETAERLIQSHPESAEDL
QEKCTELNQAWNSLGKRADQRKEKLGDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKD
VTGAEALLERHQEHRTEIDARAGTFLAFEQFGQQLLARGHYASPEIKEKLDILDQERADL
EKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDF
DKAINVQEEKIAALQSFADQLISADHYAKGVISNRRNEVLDRWRRLKAQMIEKRSKLGES
QTLQQFSRDVDEIEAWISEKLQTASDESYKDPTNIQLSKLLSKHQKHQAFEAELHANADR
IRGVIDMGNSLIDRGACAGSEDAVKARLAALDDQWQFLVQKSAEKSQKLKEANKQQNFNT
GIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNGQADSLM
TSSAFDTSQVKDKRDTINGRFQRIKSMAAARRANLNESHRLHQFFRDMDDEESWIKEKKL
LVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRL
AQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAI
QGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHEENITAKIKGLRGKVSDLEKAA
AQRKAKLDENSAFLQFNWKADVVESWIGEKENSLKTDDYGRDLSSVQTLLTKQETFDAGL
QAFQQEGIANITALKDQLLAAKHIQSKAIEVRHASLMKRWNQLLANSAARKKKLLEAQEH
FRKVEDLFLTFAKKASAFNSWFENAEEDLTDPVRCNSLEEIKALREAHDAFRSSLSSAQA
DFSQLAELDRQIKSFRVASNPYTWFTMEALEETWRNLQKIIKERELELQKEQRRQEENDK
LRQEFAQHANAFHQWIQETRTYLLDGIAYRRVIRVYQYEVGDDLSGRSCMVEESGTLESQ
LEATKHKHQEIRAMRSQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQWDQLDQLGMRM
QHNLEQQIQARNTTGVTEEALKEFSMMFKHFDKDKSGRLNHQEFKSCLRSLGYDLPMVEE
GEPDPEFEAILDTVDPNRDGHVSLQEYMAFMISRETENVKSSEEIESAFRALSSEGKPYV
TKEELYQNLTREQADYCISHMKPYMDSKGRELPSAYDYIEFTRSLFVN
NT seq
7527 nt
NT seq
+upstream
nt +downstream
nt
atgttatcgtttcgtaaactcaaagtccagaaaatggatccaagtggcgtaaaagtgctg
gaaacagcagaggatatccaagagaggcgccagcaagttttggaccgataccacaggttc
aaggaactgtctactctgagacgccaaaagcttgaagattcctatcgattccagtttttc
cagcgtgatgcagatgagctggaaaaatggatccaggagaaactccagattgcatctgat
gagaattacaaagacccaaccaatttacaggggaaactgcagaaacaccaagcctttgaa
gctgaggtgcaggccaattcaggggctattattaaactggatgagactggaaaccagatg
attaatgaagggcattttgcatctgaaactataagaactcgactgcaggagcttcatcga
ctctgggagctgttgctagagaagatgcgtgaaaagggaatcaagctgctgcaagcccag
aagctggtgcagtacttacgagaatgtgaagatgtcttggactggatcaatgacaaggaa
gcgatagtgacctcagaagaacttggccaggatctggagcatgttgaggttttacagaag
aaatttgaagagtttcagacagacctggcagcccatgaagaacgagtaaatgaagtaaac
cagtttgctggcaaacttatccaggagcagcaccctgaggaggaactgatcaagtctaag
caggatgaagtaaatgcaggctggcagcgtctgaaggggctagcccttcagaggcaggga
aaactctttggggcagctgaagttcagcgctttaacagggatgtggatgagactataagc
tggattaaagagaaagagcagttgatggcctcagatgattttggaagagacttagccagt
gtgcaggctctgctgcgcaagcacgagggcctagagagagatcttgcagctctggaggac
aaggtaaaggccttgtgtgcagaagctgatcgtctgcagcagtcccacccacaaaatgcc
tctcagatccaagtgaaacgggaggagctgattgcaaactgggagcagatccgcactctg
gcagcagagaggcacgctcgcctgaatgactcctatagattgcagcgcttccttgcagac
tttcgtgaccttaccagctgggtgactgaaatgaaggctctaattaatgctgatgaactt
gccaatgacgtagctggagctgaagctctgcttgataggcatcaggagcataagggagaa
attgatgcccatgaagatagctttaaatctgctgatgaatctggtcaggccttgctggct
gctgggcactatgcctctgatgaagttagagaaaagctgaccatcctttcagatgaaaga
actgcccttctagagctgtgggaacttcgcagacagcaatatgaacagtgtatggacctg
cagcttttctacagagacactgaacaagttgacaactggatgagcaaacaagaggcattc
ctgctaaatgaagacctaggtgactctctggatagtgttgaggcgctgctaaagaagcat
gaagactttgagaaatccctcagtgcccaggaggagaaaatcacagccctggacgagttt
gctactaaactgattcagaataaccactatgccaaggaggatgttgctacacgaagagat
gctctgctgagccgacgtaatgctctgcacgaaagggctatgtatcggcgtgctcaactg
gcagattcattccacctgcagcagtttttccgagactctgatgaactaaagagttgggtc
aacgaaaagatgaaaactgcaacggatgaggcttacaaggacccatcaaacctgcagggt
aaagttcaaaaacatcaggcttttgaggcagagctctctgcaaatcaaagtcgcattgat
gccctggagaaagctggccagaagctgattgatgtcaatcactatgcatctgatgaagta
gcagcccgcatgaatgaggtcatcagcttgtggaaaaaactgctggaggccactgagctc
aaaggaataaagctgcgtgaagccaaccaacagcagcaatttaaccgcaatgtggaagac
attgagctatggttgtatgaggtggagggacacttggcttctgatgattatggaaaagat
cttactaatgttcagaatcttcagaagaaacatgctctgttggaagcagatgttgctgct
caccaggatcgcattgatggcatcaccatccaggctcgccagttccaggatgctggacac
tttgatgctgataatatcaagaagaaacaagaagctttggtggctcgctatgaagctctg
aaggatcctatggtagctcgcaagcagaagcttgctgactctcttcgcctgcagcaactg
ttccgtgacattgaggatgaagagacctggattagagagaaggaacctattgcagcttca
acaaacagaggcaaggatttgattggggtccagaacctgctaaagaaacaccaagccttg
caggcagaaattgcaggccatgagccgcgcattaaagcagtcacccagaaaggaaatgcc
atggtggaagagggacactttgctgctgaggatgtgaaagccaaattaaatgagctaaat
cagaagtgggaatcgctgaaagccaaggcctctcagcgtcgacaagatctagaggactcc
ctgcaagcccagcagtactttgctgatgctaatgaggctgaatcctggatgagggagaag
gagcccatagtgggcagtacagactatggaaaggatgaagactctgctgaggctcttctg
aagaaacatgaagctttgatgtcagatcttaccgcttatggcagtagcatgcaggcatta
agggagcaggcccagtcatgcaggcaacaagttgctcccacagatgatgaaactgggaaa
gagctggtccttgctctctatgattatcaagagaagagtccccgggaggtgacaatgaaa
aagggagacatcctcacactgctcaacagcaccaacaaggactggtggaaggtagaagtg
aatgaccgtcagggttttgtaccagctgcctatgtgaaaaaactagaccctgcccagtct
gcatcccgagagaacctactcgaggagcaaggcagcatagccttgcggcaggagcaaatt
gacaaccagactctcataactaaggaagtcggcagtgtatctctacgtatgaaacaggtc
gaagaactatatcactctcttcttgagctgggggagaagcgaaaggatatgctggaaaaa
agttgcaaaaagttcatgcttttccgtgaggctaatgagctgcagcagtggatcaatgag
aaagagtctgcactcaccaatgaagaggtgggggctgatttggagcaggttgaggtactg
cagaagaaatttgatgactttcagaaggatttgaaagccaacgaatctcgtctaaaggac
ataaacaaggttgcgaatgacctggaatcggaagggctgatggcagaggaagtacaggca
gtacagcaacaggaagtctatggcatgcccagggatgaaactgattccaagaccgcgtct
ccttggaagtctgcacgtatgatggtacatacggtggccacctttaattccatcaaggaa
ctaaatgagcgttggagatctctgcagcagatggcagaggagcgaagccagctgctgggc
agtgcccatgaagtccagagatttcacagagatgctgatgaaacaaaggaatggattgaa
gaaaagaatcaggcattaaatacagacaactacggacatgacctggccagtgtgcaggcc
ctgcaacgcaagcatgaaggctttgagagagatttggcagctcttggagacaaggtgaac
tctttaggtgagactgctgagcgcctaattcagtcacacccagaatctgctgaagacctc
caagaaaaatgtactgaactgaaccaggcctggaatagcctggggaaacgtgccgaccag
cgtaaagagaagcttggggattcccatgacctgcagcgtttcctcagtgacttcagggac
ctcatgtcttggatcaatggaatccggggactggtgtcctcagatgaactggcaaaggat
gtgactggagctgaggctttattggagagacaccaggaacatcgcactgaaatagatgcc
agggctggcactttcctggcatttgagcagtttgggcaacaactcttggctcgtggacac
tatgccagcccagagatcaaggagaaactggatattctagatcaagaacgggcagacttg
gagaaagcctgggtccaacgtagaatgatgctggaccagtgtctagaactacagctgttt
catcgggactgtgaacaagcagaaaactggatggctgcccgggaggctttcctgaacaca
gaagataaaggagactctttagacagtgtggaggctctcatcaagaaacatgaagacttt
gataaagcaatcaatgtccaggaagaaaaaattgctgccctgcaatcgtttgctgaccag
ctgatttctgctgaccactatgctaaaggggtcatttctaacagacgcaatgaagttctg
gacaggtggcgtcgtttgaaagctcagatgattgagaagaggtctaaactgggagaatct
cagaccctccagcaattcagccgtgatgttgatgaaatagaggcttggatcagtgaaaaa
ctccaaacagcaagtgacgaatcctataaggatcccacaaacatccagctttccaaactg
ctgagcaaacaccagaaacaccaggcctttgaagctgaacttcatgccaatgcagaccgg
atccgtggagtcattgacatggggaattctctcattgatcggggagcgtgtgccggcagc
gaggatgcagtgaaggcacgtttagctgctctggatgaccagtggcagttcctggtgcag
aaatcagcagagaagagtcagaagctgaaggaagccaacaaacagcagaatttcaatact
ggaatcaaggattttgacttttggctgtcagaggtggaggctctgcttgcatctgaagac
tatggaaaagacctggcatctgtaaataacctgctgaagaaacaccaactcctggaagct
gacatatctgcccatgaggatcgcctgaaggacctgaatggccaggctgacagcttgatg
actagcagtgcttttgacacctcccaggtaaaggacaagcgagatactattaatgggcgc
ttccagcggatcaagagcatggcagctgcccgccgtgcaaatctgaatgagtcccaccgc
ttgcatcagttcttccgggatatggacgatgaggagtcctggatcaaggagaagaagctg
ctggttagctcagaggactatggcagagacctaactggagtgcagaacctaagaaagaaa
cacaaacgtctggaagcagaattggctgctcacgaacctgccatccagggtgtgttagac
actggtaaaaaactgtcagatgataacacgattggaaaggaggagatacagcagagacta
gctcagtttgtagaccactggaaggagttaaagcagttggcagcagctcgtggccaacgt
ctagaggagtctctggagtatcagcagtttgtagcaaatgtggaagaggaggaagcctgg
atcaatgagaaaatgaccctggtagccagtgaggactatggagacacacttgctgctatc
caaggcttgctgaaaaagcatgaagcatttgaaactgacttcactgtccacaaggacaga
gtgaatgatgtttgtgctaatggagaggacctcattaagaagaacaatcatcatgaggag
aacataactgcaaagataaaaggcctgaggggcaaggtgtcagatctggagaaggcagca
gctcaaaggaaggccaaactagatgagaactctgccttcctccagttcaactggaaagcc
gacgtagtggagtcttggataggtgagaaggaaaacagtctgaagaccgatgactatgga
cgggatctctcctctgtgcaaacactcctcaccaaacaggaaacttttgacgctggtctc
caggctttccaacaggaaggaatcgcaaacatcactgcactgaaagatcagttgctggca
gccaaacacatccagtcgaaggccatcgaggtccggcatgcttctttgatgaaacgctgg
aaccagctgctggctaattctgctgctaggaagaagaaactgctggaggcccaggagcac
ttcagaaaggttgaggatctgttcctgacttttgcaaagaaggcatctgcgtttaacagt
tggtttgagaatgcagaggaggacctgactgaccctgtgcggtgtaactcgctggaggag
atcaaggcactgcgcgaggctcatgatgctttccgctcctcactaagttccgcccaggct
gacttcagccagctagctgagctggatcgccagatcaagagcttccgggtagcctccaac
ccatacacttggttcactatggaggctcttgaagagacctggaggaacctgcagaagatc
atcaaggaacgtgagttagagctgcagaaggagcagcgaagacaggaggaaaatgacaaa
ttgcgccaggagtttgctcagcatgctaatgctttccaccagtggattcaggagaccagg
acgtatctgctagatggcatagcatatcgtcgtgtcattcgtgtctatcagtatgaagtt
ggggatgatctgtctggaaggtcctgtatggtggaagaatcaggaaccctggaatcacag
ctggaagctactaaacataagcaccaggagattcgggcaatgaggagtcaactaaagaag
attgaggaccttggagcagctatggaagaagcacttattttggacaacaaatatacagag
cacagcactgtagggctggcacagcagtgggaccagcttgaccaactagggatgaggatg
cagcacaacctggaacagcaaatacaagctagaaacacaactggagtcactgaggaggct
ctgaaggagttcagcatgatgttcaaacactttgacaaagataaatctggtcgtctgaat
caccaggagtttaagtcctgcttacgttctctaggctatgacctgcctatggttgaggaa
ggagaaccagatccagagtttgaagctattcttgacaccgtagatcccaacagggatgga
catgtctcactgcaggaatacatggcatttatgatcagcagggaaactgagaatgtgaaa
tccagtgaggaaatagaaagtgctttccgtgcccttagttcagagggcaagccctatgtg
accaaggaggagctctaccaaaacctgaccagggaacaggcagattactgcatctctcac
atgaagccctacatggatagcaagggcagagaacttccttctgcttatgactacatagaa
tttacacgttcactgtttgtgaattga
DBGET
integrated database retrieval system
