Trachemys scripta elegans (red-eared slider): 117889425
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Entry
117889425 CDS
T07347
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117889425 (SCAF4)
03041 Spliceosome [BR:
tst03041
]
117889425 (SCAF4)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117889425 (SCAF4)
Spliceosome [BR:
tst03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
117889425 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
117889425
NCBI-ProteinID:
XP_034649506
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All DBs
Position
1:complement(184144824..184221058)
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AA seq
1072 aa
AA seq
DB search
MEAVNAFNQELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSSAAPMAENATNNEGSPPSPAKVLSEPTQVTANSVPTVSQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPVIDNTVMAQVQAITAQLKTTTTQP
PEQKAAFPPPEQKTSFDKKLLDRFDYDDEPEAVEDSKKEDSAPSPSISQPPFGFPGEGMQ
QPVYPQLPNIDPFQPRLMGMQQDPMHHQIPLPPNGQMPGFGLLPTPQFPPMTQPVIPPTP
AVQQTFQSPFPVQSEPHIQKTHQQDMEVEQPCVQEVKRHVSDNRKSRSRSASRSPKRRRS
RSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERREREKERERRSKGLPQIKSETVSVCST
TLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNF
KVNQKSIKIAWALNKGIKPDYKQYWDVELGVTYVPWDKVKPEDLESFCEGGMLDNETLSP
EWKGISKKSENEVAQNGGAETTHNEPVSPIPKALPVPMPVPIPAPITVPPPQVPPHPSGP
PVVGALQPPTFTAPLGIPPPGFGPGVPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVS
VPHTPGISIPNSTVAGINEDTTKDLSIGNPIPTVVSGSRGNAETSDGSKIFGTVPPPVAP
TNIPPPVTQPISLLGTQGVTPPAPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFP
LMPPRHMPPHMLHRGPPPGPGSFGMPPPHGMKNPFPPPGHFVRPGGIPGVGGPGGPEDNR
DGRQFRNDRQTFTPNRDQERFGRRSFGNRVENERERYGNRNDDRDHERLGNRERREWGRR
SPERDRHRDLEERNRRSSGHRDRERDSRDRESRRDKEENRGKEKPELTDRADGDKNHESH
SGKVENADIVSELNKGESEPTGVKPDEELTSEATSSVEQAEKDTGSVVEAPR
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaacgccttcaaccaggagctcttttcactcatggagatgaaacctcct
atctcccgagcaaagatgattctcattactaaagctgccattaaagctattaagctctac
aagcatgtagtacagatagtagagaagtttatcaaaaagtgcaaaccagaatataaagtc
cctggattatatgttattgactctattgttcgtcagtctcgtcaccagtttggaacagac
aaggatgtttttgggccaagattttctaaaaatataactgccacattccagtatttatat
ctctgtccatctgaagacaagagtaagatagttcgtgtcctgaacctttggcagaaaaat
ggagtgtttaaaatagagatcattcagcctctcctggatatggcagcaggaactagtagc
gcagccccgatggcagaaaacgctacaaataatgaaggttcaccaccctctccagcaaag
gttctatctgagcccacccaagtcactgctaattcagtacctactgtatcacaattgcct
agttctgatgcctttgcagctgtagctcagttatttcagacaacacaaggacaacagctt
cagcagattcttcagacttttcagcagcctccaaaaccccagtctccagtcatagataat
actgtaatggctcaagttcaggctattactgctcaattgaagactacgacaacacaacca
ccagaacaaaaagctgctttcccgccacctgagcaaaaaacttcttttgataagaagctg
ctagatcgatttgactatgatgatgagccagaagcagtagaagactccaagaaagaggat
tcagctccgtctccttccatttctcaaccaccatttggatttccaggagaaggtatgcag
cagccggtatatccacagctcccaaatatagacccatttcaaccacgactgatgggaatg
cagcaagatccaatgcaccaccagatcccgctccctcctaatggacaaatgccaggtttt
ggacttctacctaccccacagtttcctcccatgactcagcctgtgataccaccaacacca
gcagtgcagcaaactttccagtctcctttcccagtacagagtgaaccacacatacagaaa
acacatcagcaggatatggaggtggaacagccctgtgttcaggaagttaaacgacatgtt
tctgataacagaaaatcaagatctagatcggcatcaagatctccaaaaaggagacgatcg
aggtctggatctcgatctcgaaggtcacgtcatcgtcgctctcgttcccgatcccgggat
aggcgccgacactctcctagatctcggtcgcaggaaaggcgtgaacgagaaaaagagaga
gaacgcagatcaaaaggccttcctcaaatcaaatcagaaactgttagtgtttgtagtact
acactctgggtaggacaactagacaaaagaacaactcagcaggatgttggaagtctttta
gaggagtttggcccgattgaatctataaatatgataccgcctagaggatgtgcctatatt
gtaatggttcacagacaggatgcttaccgtgccctacaaaaactgagccggggcaacttc
aaagtcaatcagaaatctataaagattgcgtgggctttaaataaaggaattaaaccagac
tataagcagtattgggatgtagaattaggtgttacctacgtaccgtgggacaaagtgaag
cctgaagaccttgaaagtttttgtgaaggaggaatgttggacaatgaaactcttagccca
gagtggaaaggaatttctaagaaatctgaaaatgaagtagctcaaaatggaggtgcagaa
actacacataatgaaccagtgtcacctatccctaaagcattgcctgttccaatgcctgtt
cccataccagcacctataacagtacctcctccacaggttccaccacatccatcaggtcca
cctgtagttggtgcacttcagccgcctactttcacggctcctttagggatccctcctcct
gggtttggccctggtgtaccaccaccacctccatttttgcgacctggattcaatccaatg
catttgcccccaggttttcttcctcctggaccgccacctcctataacccctccagtatct
gttcctcacactccaggaataagcatcccaaattctactgtggctggcataaatgaagac
actacaaaagacttatctattggaaatcccattccaactgtggtttctggatcgagaggg
aatgctgaaactagtgatggttccaaaatatttgggactgttccaccacctgtagcacct
actaacatacctccacctgtcacccaacctatttcacttcttggtactcaaggggttaca
ccacctgctcctgtgatcgggctacaggcaccatctactggcctccttggtgcacggcct
ggtttaataccactccagcgacctccaggaatgccaccacctcatctacaacggtttccc
ttgatgccacctcggcacatgcctccccatatgttgcacagaggtccacctccaggacca
gggagctttggaatgcctccaccacatggaatgaaaaacccttttccaccacctggtcac
tttgtcaggcctggtgggataccaggagttggaggaccaggtgggcctgaagataataga
gatggaaggcagtttaggaatgataggcagacattcactcctaatagagaccaggaaagg
tttggaaggaggtcttttggaaaccgggtagaaaatgagcgtgagcgctatggtaaccgc
aacgatgatagagatcatgagcgacttggtaatcgcgaaaggagagaatggggaagaaga
agccctgaacgtgatagacatagagacttggaggagagaaatagacggtccagtggacac
cgagacagagagagagattctagagatagggagtctcgtagagacaaggaagaaaatcga
ggaaaggaaaaacctgagctgacagacagggcagatggtgacaaaaaccatgaatctcat
agtggcaaagtggaaaatgcagacattgtttcagaacttaataaaggggagtctgaacct
acaggtgtaaaacctgatgaagagttaacatctgaggctacctcatctgttgagcaagcc
gaaaaggataccggctcagttgtagaggctcctcgctag
DBGET
integrated database retrieval system
