Treponema succinifaciens: Tresu_1883
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Entry
Tresu_1883 CDS
T01461
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsu
Treponema succinifaciens
Pathway
tsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tresu_1883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsu03019
]
Tresu_1883
03009 Ribosome biogenesis [BR:
tsu03009
]
Tresu_1883
Enzymes [BR:
tsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tresu_1883
Messenger RNA biogenesis [BR:
tsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tresu_1883
Ribosome biogenesis [BR:
tsu03009
]
Prokaryotic type
rRNA helicases
Tresu_1883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
CMS1
Cas3-like_C_2
UBA_ARI1
DUF6839
Motif
Other DBs
NCBI-ProteinID:
AEB14772
UniProt:
F2NSJ8
LinkDB
All DBs
Position
complement(2028573..2030672)
Genome browser
AA seq
699 aa
AA seq
DB search
MEDLENKVDGITMPAEDSQVSVENSNESSNEPETISFADLGLDEITLAAIEKKGFKVPSP
IQVLAIPRLLNGDANVIAKARTGTGKTAAFGLPLVQDLREESDHVRAIILEPTRELAMQT
ATEMASFTTGKYPRTAVVYGGASMGEQMRALRRGVEIVVGTPGRVQDLIDRGVLDISKID
YFILDEGDEMLDMGFIEDIENIFECANQDCRVLLFSATVPKEILKIAQRFMGEYEIVEEE
GFEEEPLLIEQKYWVMRESEKVDALVRLIDISPDFFGLVFVQRKSDADYVSKSLDERGYE
AAALHGDIPQGQREKILARFRSKKTRILVATDVAARGIDIEGVTHVVNYELPFDGPTYVH
RIGRTGRAGAAGMAVTFVKPEETRRRLNYLINTVKKSSKGEIVEDKVPSIEEVLEAKKSR
LFSDIKNKLGLNQEKSESQAESDSVSADENAEANACAEPKVPHLRKGDPIFDKLAEELCN
GQNPEEVVASLLAVSYGGMLNKNRYGKINTYSVESKGRDRDRGGRRERDRGSRRGGDAFV
GDDQLRLYVQMGWDNGYNPRKIADFFHDLLGVPGRKVDAIDMADKFCLLSLPADDGRRAI
ELSERDRSLPHMHLDTKVTGGGLGERDSFGRDRGSRRGGRDRGRERDRGFGRDRDFGGRR
ERDRDRGFRGGSHARAGVHTATQRSGSSSFFKRSDAQEY
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggaagatttagaaaacaaagttgacgggattactatgcccgcagaggattcacaggtt
tctgtggaaaattcaaatgaatcatcgaatgagcctgagacaatttcatttgcagacttg
ggacttgatgaaatcactcttgccgctattgagaaaaaaggttttaaagttccttcacca
attcaggttcttgcaattccgcgtcttttgaatggagatgcgaatgttatcgcaaaggcc
cgcactggaactggaaaaaccgccgcttttggacttcctcttgttcaggatttgcgtgaa
gaaagcgaccatgtccgcgcaataattcttgagcctacacgcgagcttgccatgcagact
gcgactgaaatggcttcgtttacaactggaaaatatccgcgcactgctgttgtttacggc
ggagcttcgatgggcgagcagatgagagctttgcgccgcggagttgaaattgttgttgga
actccgggacgtgttcaggacttgattgaccgcggtgttcttgatatcagcaaaatcgat
tactttattcttgatgaaggcgatgaaatgcttgacatgggattcatcgaggatattgag
aatatttttgaatgcgcaaatcaggattgccgtgttcttttgttcagtgcgacagttccg
aaagaaattttgaaaattgcccagcgttttatgggcgaatacgaaattgttgaagaagaa
ggctttgaagaagagccgcttttgattgagcagaaatattgggttatgcgcgaaagtgaa
aaagtcgatgctttggttcgtcttattgatatttcgcctgatttcttcggacttgttttt
gttcagagaaaatctgatgctgactatgtttcaaagtcacttgacgagcgcggatatgaa
gccgccgcattgcacggagatattcctcagggacagcgtgaaaaaatccttgcgagattc
cgttcaaagaaaacaagaattcttgttgcgactgatgttgctgctcgcggaattgatatt
gaaggcgtaactcacgttgtaaactacgagcttccttttgacggtccgacttatgttcac
cgtattggacgtacaggacgtgccggagctgctggaatggcggttacttttgtaaagccg
gaagaaacccgcagacgtcttaattatcttattaatactgtaaagaaaagttccaagggc
gaaattgttgaagacaaagttccttcaatagaagaagttcttgaagcaaaaaagagccgc
ctgttttctgatataaaaaacaagcttggactcaatcaggaaaaatctgaatctcaggct
gaaagtgattctgtttccgcggatgaaaatgcagaagctaatgcttgtgcagagccaaaa
gttcctcacttaagaaaaggcgatcctatttttgacaagcttgcggaagaactttgcaac
ggccagaatccagaggaagttgtagcttcattgcttgcagtttcttacggcggaatgctg
aacaaaaaccgctatggaaaaatcaacacttattctgttgaatcaaaaggacgcgacaga
gaccgtggcggacgccgtgaacgcgaccgtggctcaagaagaggcggagatgcttttgtt
ggcgatgatcagcttaggctttatgttcagatgggatgggacaacggctacaatccaaga
aaaattgcggatttcttccatgacttgcttggcgttccggggcgtaaagttgatgctatt
gatatggcggacaaattttgtcttctttctttgccggctgacgatggaagaagagctatt
gagctttccgagcgcgatcgttctttgccgcatatgcaccttgacacaaaagttactggc
ggcggacttggtgagcgcgattcatttggacgagaccgtggctcaagaagaggcggacgc
gatagaggacgtgaacgcgaccggggatttggacgcgacagagattttggtggacgtcgc
gaacgtgatagagacaggggattccgcggaggttctcatgcaagagctggagttcacact
gctacacagagaagcggttcatcttcattcttcaagagatctgatgctcaggaatattaa
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