Thiomicrolovo subterrani: WCX49_02635
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Entry
WCX49_02635 CDS
T11234
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tsub Thiomicrolovo subterrani
Pathway
tsub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WCX49_02635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsub03400
]
WCX49_02635
Enzymes [BR:
tsub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WCX49_02635
DNA repair and recombination proteins [BR:
tsub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WCX49_02635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XAU03352
LinkDB
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Position
519830..522814
Genome browser
AA seq
994 aa
AA seq
DB search
MQAKLYTYLKKGSLPDVLICEDAAEAQQLRDLCRFKEIDAVVLPDFRATWLDDLRPFSEE
LSQMAEALRRYYEADKKPLVIAPFKSLLFPLPKTNLLRTKQIAFGDRLDLAALKTELLHW
GYSFVDLVEVEGEVSFRGDIIDVFAPGTESPYRISLFDDEIEQIKAFEVETQRTVGEELE
GFELHSAPYAFDEAGYERIVAAVEASTSDSFVKDIDSLGFWYLGDDAENFLEGKKVAAVK
RLDAMIGEAYTLNTPQVPQSVFESVAVLPEDDRVKALAVTDVKTLLEVHPNKKVTVIASS
DAQLKQAGLFDTRGITVKRSGEIVNLITDTELIISLNKPVRKKRRRKSSLLLDDLKPGDY
VVHEDHGVGIFEAIEQAEILGSVRDFIAIRYQGDERVLLPVENLDAIDRYIAGAGAPPVL
DRLGKGSFGRLKETVRKRLFEIASEIVNTAAQRALISAPVIETDPKQLQAFQSRAGFEYT
EDQARSIAEIIAEIGSGLVMDRLLSGDVGFGKTEVAMNAMFAAASAGYQSAVIVPTTLLS
SQHFASLKARFAEYDFHIAKIDRFVTPKVKKAVEAGLADGTIDMVVGTHALFGTKFAKLG
LVVIDEEHKFGVKQKEKLKTLYEKTHLLTMSATPIPRSLNQALSSIKTLSTLMTPPGERQ
GVRTFVKAYDEKLVKEVILRELRRGGQVFYVYNSIDHMPIKLGELKAILPDLRILMLHSQ
VGAVETEKELLRFQEGEYDLMLATSIIESGIHMPRVNTMIIDGADRFGIADLHQLRGRVG
RGHTEGFAYFIVEDKERITEEAKKRLVALESNSFLGSGSVLAYHDLEIRGGGNLVGDAQS
GHIKNIGYSLYLRMLEDAIKELSNKKETPKAKVDLKLAVSAYISDELVAEDRLRLELYRR
LSLCESPTEVYEIEEEVTERFGRPDGPTKQFFELMVIKLMGLEKHIKMLSSYGQNITIEY
LNGSKEYVTADSKDDDDIIKAVLHYLRTAKPKVL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccaagctctacacctacctgaaaaagggtagcctccccgacgtccttatctgc
gaagacgccgccgaagcgcagcagctccgcgacctctgccgcttcaaggagatcgacgcg
gtcgtcctccccgacttccgcgcgacctggctcgacgacctccgccccttcagcgaagag
ctgagccagatggccgaggcgctgcgccgttattacgaggcagataaaaagcccctcgtc
atcgcccccttcaagagcctgctcttcccgcttcccaaaacgaacctcctgcgcacgaag
cagatcgccttcggcgatcgcctcgacctcgcagccctcaagacggagctgctgcactgg
ggttacagcttcgttgacctcgtggaggtggagggggaggtctccttccgcggcgacatc
atcgacgtcttcgcccccggtacggagtctccctaccgcatctccctcttcgacgacgag
atcgagcagatcaaggctttcgaggtggagacccagcgcaccgtcggcgaggagctggag
ggcttcgagctgcacagcgccccctacgccttcgacgaagcgggctacgaacgcatcgtc
gcggcggtagaagcctcaacgagcgacagcttcgtcaaggacatcgactctttgggcttc
tggtacctcggtgacgacgcggagaacttcctggagggcaaaaaggttgccgccgtcaaa
cgcctcgacgcgatgatcggcgaggcctacaccctcaacaccccgcaggtaccgcagagc
gttttcgaatccgtcgccgtgcttcccgaagacgaccgggtcaaggccctcgcggtcacg
gacgtcaaaaccctgctggaggtccacccgaacaagaaagtgacggtaattgccagcagc
gacgcgcagctgaagcaggcgggcctcttcgacacgaggggcatcaccgtcaaacgctcc
ggcgagatcgtcaaccttattaccgacaccgagctcatcatctcgctgaacaaaccggta
cgcaaaaagcggcgccgcaagagcagcctcctgctcgacgacctcaagcccggcgactac
gtcgtccacgaggaccacggggtcgggatcttcgaggccatcgaacaggcggagattctc
ggctctgtgcgcgacttcatcgccatccgctaccagggcgacgagcgcgtcctgctgccg
gtggaaaacctcgacgccatcgaccgctacatcgcgggcgccggggcgccgccggtgctc
gaccgcctgggcaaggggagcttcggacgcctcaaggagaccgtgcgcaaacgcctcttc
gagatcgcctcggagatcgtcaacaccgccgcccagcgcgcgctcatcagcgcccccgtc
atcgagaccgatcccaagcagctgcaggccttccagtcccgcgcgggcttcgagtacacc
gaggaccaggcgcgctccatcgccgagatcattgccgagatcggcagcggcctcgtcatg
gaccggctcctcagcggggacgtcggcttcggcaagaccgaggtagcgatgaacgcgatg
ttcgccgcggcctccgcggggtaccagtcggccgttatcgtgccgacgaccctgctgagc
tcccagcacttcgcctcgctcaaggcgcgcttcgccgagtatgatttccacatcgccaag
atcgaccgctttgtcaccccgaaggtgaagaaagccgtcgaggcggggctggccgatggg
accatcgacatggtcgtcggcacccatgcgctcttcgggacgaagttcgccaaactgggc
ctcgtcgtcatcgacgaagagcacaagttcggggtgaagcagaaagagaagctcaagacc
ctctacgagaagacgcacttgctcaccatgagcgccacgccgattccgcgcagcctcaac
caggcgctctcttccatcaagaccctcagtaccctcatgacccctccgggcgaacggcag
ggggtacggaccttcgtcaaggcctacgacgagaagctcgtcaaagaggttattttgcgg
gagctgcgccggggcgggcaggtcttttacgtctacaactccatcgaccatatgccgatc
aagctgggtgaactcaaggcgatcctgccggatcttcgcatcctcatgctgcactcgcag
gtcggcgcggtcgagacggaaaaggagctgctgcgtttccaggagggcgaatacgacctc
atgctggcgacctccatcatcgagtcgggcatccacatgccgcgggtcaacacgatgatc
atcgacggggccgaccgcttcggcatcgccgacctgcaccagctgcgcggccgcgtcggc
cggggccacacggaggggttcgcctacttcatcgtcgaggacaaggagcgcattaccgag
gaggcgaagaagcgcctcgtcgccctggagtccaactccttcctcggcagcggctcggtg
ctcgcctaccatgacctcgaaatccggggcggggggaacctcgtgggcgatgcgcagagc
gggcacatcaagaacatcggctacagtctctacctgcggatgctcgaggatgccatcaag
gagctgagcaacaagaaagagacccccaaggcgaaggtggacctcaagctcgccgtcagc
gcctacatcagcgacgagctcgtcgccgaggaccgcctgcgcctggagctctaccgccgc
ctcagcctctgcgagagcccgacggaggtctacgagatcgaggaggaggtcacggagcgc
ttcggacgcccggacggcccgaccaagcagttcttcgagctgatggtcatcaagctgatg
gggctggagaagcacatcaagatgctcagctcctacggccagaacattactatcgaatat
ctcaacggctccaaggagtacgtcaccgccgacagcaaagacgacgacgacatcatcaag
gccgtgctgcactacctgcgcacggcgaagccgaaggtgctttaa
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