Thiomicrolovo subterrani: WCX49_02815
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Entry
WCX49_02815 CDS
T11234
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tsub Thiomicrolovo subterrani
Pathway
tsub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCX49_02815 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsub03021
]
WCX49_02815 (rho)
03019 Messenger RNA biogenesis [BR:
tsub03019
]
WCX49_02815 (rho)
Transcription machinery [BR:
tsub03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
WCX49_02815 (rho)
Messenger RNA biogenesis [BR:
tsub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WCX49_02815 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
OB_RNB
Spore_III_AA
AAA
S1CSD-TOTE-2
OB_RNR_1st
AAA_25
Motif
Other DBs
NCBI-ProteinID:
XAU03388
LinkDB
All DBs
Position
complement(556826..558148)
Genome browser
AA seq
440 aa
AA seq
DB search
MSDTSRSNNSRNNKNRTHKPVEGYTVEDLREKTIDELVAMAEELGVESPNELKRQDIIFE
ILKAQTAQGGFILFTGILEVMQDGYGFLRSVDKSFSDSLNDAYVSSTQIKRFALRNGDVV
TGQVRAPKDQERYYALLKIEAINYVPPEESKKRPLFENLTPLYASEQLKLEYQPTHLTGR
MMDLFSPIGKGQRGLIVAPPRSGKTELMKEIAHGITHNHPEVELMVLLVDERPEEVTDME
RSVKGEVYSSTFDMPAKNHVKVAEMVIERAKRRVEIGKNVVILLDSITRLARAYNTVTPS
SGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALIETGSRMDEVIFEEFKGTGN
SEVVLSRKISDRRIFPAIDILKSGTRKEELLVGPDVLQKVFILRSMLHKQEDEVEALRFL
YTKMQKTKSNDEFLSMMNEG
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatacttcgcgcagcaacaattcacgaaacaataaaaacaggacccataagccc
gtcgaaggctacaccgtagaggacctgagagagaagacgatcgacgaactggtcgccatg
gccgaagagctcggcgtcgagagccccaacgagctcaaacgccaggacatcatcttcgaa
atcctcaaagcccagaccgcccagggagggttcatcctctttaccggtatcctcgaggtc
atgcaggacggctacggcttcctccgctccgtcgacaagagcttcagcgactccctcaac
gacgcctacgtctccagcacccagatcaagcgcttcgccctgcgtaacggggacgtcgtc
accggccaggtccgtgcaccgaaggaccaggagcgctattacgccctgctcaagatcgaa
gcgatcaactacgtaccgcccgaagagagcaaaaaacgcccgctcttcgaaaaccttacg
cccctctacgccagcgaacagctcaagctcgagtaccagccgacccacctcaccggccgg
atgatggacctcttctcccccatcggtaaagggcagcgcggcctcatcgtcgccccgccg
cgttcgggtaaaacggagctcatgaaagagattgctcacggcatcacccacaaccacccc
gaagtcgaactgatggtcctgctcgtcgacgaacgccccgaagaggtcaccgacatggag
cgctccgtcaagggcgaggtctactcctccaccttcgacatgccggcgaagaaccacgtc
aaggtcgccgagatggtcatcgagcgcgccaagcgccgcgtagagatcggcaagaacgtc
gtcatccttttggattccatcacccgtctcgcccgcgcctacaacaccgttacaccttcc
agcggtaaggtcctctcggggggtgtcgacgccaacgccctgcacaaacccaagcgcttc
ttcggtgccgcccgtaacatcgagaacggcggctccctcaccatcatcgcgacggccctg
atcgaaacgggaagccgcatggacgaggtcatcttcgaagagttcaaggggacgggtaac
tccgaggtcgtgctcagccgcaagatctccgaccgccgtatcttcccggcgatcgacatc
ctcaagtccggtacccgcaaagaggagctcctcgtcggtccggacgtcctgcagaaggtc
tttatcctccgctccatgctgcataagcaggaggacgaggtcgaggcgctccgcttcctc
tacaccaagatgcagaagacgaagtccaacgacgaattcctctccatgatgaacgagggc
taa
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