Thiomicrolovo subterrani: WCX49_03970
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Entry
WCX49_03970 CDS
T11234
Name
(GenBank) HNH endonuclease
KO
K03555
DNA mismatch repair protein MutS
Organism
tsub Thiomicrolovo subterrani
Pathway
tsub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
WCX49_03970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsub03400
]
WCX49_03970
DNA repair and recombination proteins [BR:
tsub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
WCX49_03970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
DUF968
HNHc_6
HNH_2
MutS_II
AAA_21
AAA_16
Motif
Other DBs
NCBI-ProteinID:
XAU03612
LinkDB
All DBs
Position
784369..787443
Genome browser
AA seq
1024 aa
AA seq
DB search
MLHSEIDGILNSKDRLLTEVYFDLQRRFEEKYGSDTVVFMEIGTFYEVYEVNNDDMQVGK
AKEMAELLNIQLTKKNKNIPENSVKNPFLAGVPSVSFERYLGRLIQEQRYTIIVIRQKGV
PPKLSRFIGQIISPGTNFDHTVDNDDNYIVSLLIDRHKDIYSVGYAAIDVTTGKTWLYET
YGTSEDPTYALDEIFNLLNIYRTTEVVLTFLEGVENQKEVIRYLEISEHYAYSVNHERPK
IDYQNELFENVYQIQSLLSPIEHLDLERHPFVSEALATLVHFVIEHDYHIIQKLARPKMI
DNTRYMYLGNNALEQLAVISKDRSDMTLLKLVDKSVTAIGKRLLKERLLNPIQERSELER
RYGLIDRVMPHVRMLGDALRGVYDLERLHRRIALARLHPFEMNYVHASLVGIRELMEFVK
RHKLIKTPFSEQEVDTFIRDIEQSIDLEVSRRFTVSTVDDNFLRRGVDVQVDALVDENAR
MLQHFAIIMDAMERMLGEQGAAAGSGGYVSLGVLDKEGHYISMSRTRWAMIEKEFASGSV
DLGGETVCFSDFSVKRLTNSVKITSELTEQLSDKIMRNQAKIIALVKERFIALQRTFERR
YTLLFERLIGYVADLDVAVASARAAQQYNFACPTIVDVHEDENFLQLMALRHPLIEIQER
QGIYVPNDIVMGNRAYMDLPYPETVMLDPAVHDGHDVNGVLLYGINSSGKSSLMKSVGLA
VLMAQAGFYVPASSMKFSLFESLFTRIVSRDNLQKGLSTFAVEMMELKNIFNRAGTRSLI
LGDEISHGTETLSGVAIVASAIMKLAKLRSIFLFATHLHQLANMEEMRRLENVVDLHLSV
EYDALKDKLVFNRVLQSGSGSSVYGLEFARSLHMDSEFLEAANRIRKRLSNDFDELELLV
KKRTSKYNKDLYVTTCVICGAKAEDVHHIAHQSSADARGFIGHVPVNHRHNLVPLCRDHH
REIHEGKLVVKGFVMTSSGLELDVEEQLARVQVVKEEVPEINTVDVPESEPEAPRKASID
MDDF
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
gtgctacacagcgagattgatgggattctcaacagcaaagaccgcctgctgaccgaggtc
tatttcgacctgcagcgccgtttcgaagagaagtacggcagcgatacggtcgtctttatg
gagatcggcactttttacgaagtctacgaggtcaacaatgacgacatgcaggtgggcaag
gccaaggagatggccgaactgctcaatatccagctgacgaagaaaaacaagaacatcccc
gaaaacagcgtcaagaacccctttctcgccggtgtgccctccgtctcgttcgagcgctat
ctggggcgcctgatccaggaacagcgctacacgatcatcgtcatccgccagaagggggtg
ccgccgaagctcagccgcttcatcgggcagatcatctccccgggcacgaacttcgaccat
accgtcgataacgacgacaactacatcgtctccctcctgatcgaccgccacaaagatatc
tacagcgtcggctatgcggccatcgacgtgacgacggggaaaacctggctctacgagacc
tacggcacgagcgaagaccccacctatgccctggacgagattttcaacctgctcaacatc
taccgcacgacggaggtggtattgacctttctggagggggtggagaaccagaaagaggtg
atccgctacctcgagatcagcgagcactacgcctacagcgtcaaccacgaacgcccgaag
atcgattaccagaacgaactctttgaaaacgtctaccagatccagtccctgctgtcgccg
atcgaacacctcgacctggagcgccaccccttcgtttccgaagcgctggcgacgctggta
cacttcgtcatcgaacacgactaccacatcatccagaagctcgcccgcccgaagatgatc
gacaacacccgctacatgtacctgggcaacaatgccctggagcagctggccgtcatctcc
aaagaccgcagcgacatgacgctgctcaaactcgtcgacaagagcgtcaccgcgatcggg
aagcgcctgctcaaggagcgcctgctcaaccccatccaggagcgcagcgagctggagcgc
cgctacgggctgatcgaccgggtaatgccgcatgtgcggatgctcggggatgcccttcgg
ggggtctatgacctcgagcgcctgcaccgccggatcgccctggcgcgcctgcaccccttc
gagatgaactatgtccacgcctcgctcgtcggcatccgggagctgatggagttcgtcaaa
cggcacaagctcatcaagacccccttcagcgagcaggaggtcgacacctttatccgcgac
atcgagcagagcatcgacctggaggtgtcccgccgtttcaccgtcagcacggtcgacgac
aactttctgcgccggggcgtcgacgtgcaggtggacgcactggtggacgagaatgcccgg
atgctgcagcacttcgcgatcatcatggacgcgatggaacggatgctcggcgaacagggg
gcggcggccggaagcggcggttacgtctccctgggtgtcctggacaaagaggggcactac
atctccatgagccgcacccgctgggcgatgattgagaaggagttcgcctccggcagcgtc
gacctgggcggcgagacggtctgtttcagcgacttcagcgtcaagcggctcaccaacagc
gtcaaaatcacctcggaactgaccgaacagctctccgacaaaattatgcgcaaccaggcc
aagatcatcgccctggtcaaggagcgcttcatcgccctgcagcgcacctttgagcggcgc
tatacgcttctgttcgagcgccttatcggctacgtggccgacctcgacgtcgccgtcgcc
tccgcgcgggcggcgcagcagtacaactttgcctgcccgacgatcgtcgacgtccatgag
gacgagaacttcctgcagctcatggcgctgcgccacccgctcatcgagatccaggagcgg
caggggatctacgtgcccaacgacattgtcatgggcaaccgcgcctacatggaccttccc
tatcccgaaacggtcatgctcgatcccgccgtgcacgacggtcatgacgtcaacggcgtc
ctgctctacggcatcaactccagcgggaaatcctcgctgatgaagagtgtcgggctggcc
gtgctgatggcacaggccggtttctacgtgccggcgtcgtcgatgaagttctcgctcttc
gagtcgctctttacacggatcgtctcccgggataacctgcaaaaagggctctccaccttc
gccgtcgagatgatggaactcaaaaacatcttcaaccgcgccgggacacggtcgctgatc
ctcggcgacgagatctcccacgggacggagacactctccggcgtcgccatcgtcgcgagc
gcgatcatgaagctggcgaaactgcgctccatcttcctctttgctacccacctgcaccag
ctggccaacatggaagagatgcggcggctggagaatgtcgtcgacctgcacctgagcgtg
gagtatgatgcgctcaaagacaagcttgtctttaaccgggtgctgcagtcgggcagcggt
tcgagcgtctacggtctggagttcgcccgctcgctgcacatggattcggagttcctggag
gcggcgaaccgtatccgcaagcggctctccaacgactttgacgaactggagctgctggtg
aaaaaacgcaccagcaagtacaacaaggatctctacgtcaccacctgtgtcatctgcggg
gcgaaggcggaggatgtccaccacatcgcgcaccagtccagtgccgatgcccgcgggttt
atcggccacgtgcccgtcaaccaccgccacaatcttgtccccctctgccgtgaccaccac
cgggagatccatgagggcaagctcgttgtcaagggcttcgtgatgacctccagcgggctg
gagcttgacgtcgaggagcagctggccagagtgcaggtcgtcaaagaggaggtcccggag
atcaacacggtcgacgtaccggagagcgaacccgaagcgccgcggaaagcctccatcgac
atggatgatttctag
DBGET
integrated database retrieval system
