Thiomicrolovo subterrani: WCX49_05890
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Entry
WCX49_05890 CDS
T11234
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
tsub Thiomicrolovo subterrani
Brite
KEGG Orthology (KO) [BR:
tsub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsub03019
]
WCX49_05890 (hrpB)
Enzymes [BR:
tsub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
WCX49_05890 (hrpB)
Messenger RNA biogenesis [BR:
tsub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
WCX49_05890 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
CON_HrpB
Cas3-like_C_2
AAA_19
Flavi_DEAD
AAA_30
DUF1133
Motif
Other DBs
NCBI-ProteinID:
XAU03986
LinkDB
All DBs
Position
1150319..1152793
Genome browser
AA seq
824 aa
AA seq
DB search
MLSELPIHAVLPEIGQAFSASNQLILQAPPGAGKTTVVPLELLEAQWLEGKKIVMLEPRR
LAARNAALRMAELLGEAVGQRVGYRIRQETKVSAATRIEVVTEGILTRMLQSDPALEDVG
VLIFDEFHERSIHADLGLALSLQSQSLLRDDLKLVVMSATLNAEALTGVMPDAAVVTSEG
RCYLVAYSYLDIRRKPPEAKTVAALTAETITAALKAETGSMLVFLPGVREINAVERALQG
NLGSDTLLAPLYGDLARAAQQHAIAPAPAGKRKVVLATNIAETSLTIDGVRIVIDSGLER
YVEYDAASGMNRMRTRMITQDSAVQRAGRAGRTQEGVCYRLWHENKPLVPHARPEILQSD
LAPLMLELANWGASVDELEWVDAPPKHAVDEASSLLISLNMADSSGRITPHGEAALSLGA
HPRMAHMLLRAKAQGLGYEAVLIATLLQERTGFSGTDLGEGMGWLDRSLQSGSCGSVLHH
AVNVLKKRTGCERGSKVQHDAAGVLTALAYPDRIAKRRSRGSERFVMANGKGAELGDATA
FLHDDYLAVAEAGGQGEVLRIFHAAGLSAADLEAWFSELIRTDEDVSWNDEAGRVEALRT
ERIGAVVIAQSRIANPSPELVALGVLDGIRRGGLDLLPWTPKSRSLCERVNFVNRHLPET
FGPMDEAALLKTLETWLLPYLEGIRDLKGLQKLDLYAILSGLLDWDALQRLDALAPEAVT
VPSGSTIRIDYTDPGQPVLAVRLQEVFGWEQTPAVLEGRVALMLHLLSPAQRPVQVTKDL
ASFWREGYAEVRKELRGKYKKHYWPEDPYEAVATAKTKKGMARG
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgttatccgaacttcccattcacgctgtccttcccgaaatagggcaggcgttttccgct
tctaaccagctcatactgcaggctccgccgggtgcgggaaagacgactgtcgtaccgctg
gaactgctggaggcgcagtggttggagggcaaaaagatcgtcatgctggagccgcggcgg
ctcgcggcgcgcaacgcggcgctgcggatggcggagctcttgggcgaggcggtcgggcag
cgggtagggtaccgcatccggcaggagacgaaggtctcggcggcgacgcgcatcgaggtc
gtgaccgaggggatcctgacgaggatgctccaaagcgacccggcgctggaggatgtcggg
gtgctcatcttcgacgagttccacgaacgctctatccatgccgacctggggctggcgctc
tccttgcagtcacagtcgctgctgcgcgacgacctgaagcttgtcgttatgtcggcgacg
ctcaacgcggaggcgctgacgggggtgatgcccgatgccgccgtcgtcacgagcgagggg
cgctgctacctggtggcgtacagttacctcgacatacgccgcaaacctcccgaggcgaaa
acggtcgccgccctgacggcggagacgatcacggccgcgctcaaggcagaaacgggcagc
atgctcgtcttcctgcccggcgtcagagagatcaacgccgtcgaacgtgccttgcagggg
aacctcggaagcgacacgctgctggcgccgctgtacggcgacctcgccagggcggcgcag
cagcacgccattgcccctgcacctgcgggcaaacgcaaggtcgtcctcgcgacgaacatc
gccgaaacgtcgctgaccatcgacggggtacggatcgtcatcgacagcgggctggagcgc
tatgtggagtacgacgcggcctcggggatgaaccggatgcgcacgcgcatgatcacgcag
gactccgccgtgcagcgtgccgggcgggcagggcggacacaggagggcgtctgctaccgg
ctctggcatgagaacaagccgctggtgccgcatgcacgtcctgaaatcctgcagtctgac
ctggcccccctgatgctcgagctggccaactggggcgcatccgtcgatgagcttgaatgg
gtcgatgcacccccgaaacacgcagtagacgaggcgtcgtctcttttgatatcacttaat
atggcagattcgtccggccgcattacgccccacggcgaagcggcgctctcactcggcgcg
cacccgcgcatggcccatatgctgctgcgcgcaaaagcgcaggggctggggtacgaagcg
gtactgattgccacgctgctgcaggagcgtacgggtttcagcggcacggacctgggcgag
gggatggggtggctggaccgctccctgcagtcgggatcgtgcggcagcgtattgcaccac
gccgtcaacgtcctcaaaaagcgcacgggatgcgagcggggaagtaaggtccagcatgat
gcggcgggagtgctgacggcgctggcctatcccgaccgcatcgccaaacgccggagccgg
ggttcggaacgcttcgtgatggccaacggcaagggggcggaactgggcgacgccactgct
ttcctgcacgacgactatcttgccgtcgccgaggccggcgggcagggggaggtgctgcgc
atcttccacgccgcagggctgagcgcggcagacctggaggcgtggttcagtgagttgatc
cggacggatgaagacgtttcatggaacgatgaagcgggtcgggtagaagccctgcgcacg
gagcgcatcggggccgtcgtcattgcccagtcgcgcatcgccaacccttcgccggagctg
gtggcgctgggcgtactcgacggcatccgcaggggcggtctcgatctgctgccgtggacg
ccaaagagcaggtctctgtgcgaacgggtcaatttcgtcaaccgccatctgccggagacg
ttcggcccgatggacgaggctgctctgctaaagacgctggaaacgtggctgctcccctac
ctggagggaatccgcgacctcaaggggctgcagaagctcgatctctatgcgatactctcc
ggcctgctggactgggacgcgctccagcggctcgatgccctggcacccgaagcggtgacg
gtgcccagcggttcgaccatccgcatcgattataccgaccccggccaacccgtgctcgcc
gtacgcctgcaggaggtgttcggctgggagcagacaccggcggtgctggaggggagggta
gcgctgatgctgcacctgctcagcccggcgcagcggccggtacaggtgacaaaggacctg
gcgtcgttctggcgggaggggtatgcggaggtgcgcaaggagctgcggggcaaatataaa
aaacactactggcccgaagacccctacgaggcggtcgcgactgcaaagacaaaaaagggg
atggcccggggctga
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