Thiomicrolovo subterrani: WCX49_06315
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Entry
WCX49_06315 CDS
T11234
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tsub Thiomicrolovo subterrani
Pathway
tsub02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tsub00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
WCX49_06315 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsub03021
]
WCX49_06315 (rpoD)
Transcription machinery [BR:
tsub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
WCX49_06315 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
HTH_36
Vpu
Motif
Other DBs
NCBI-ProteinID:
XAU04069
LinkDB
All DBs
Position
complement(1237167..1239020)
Genome browser
AA seq
617 aa
AA seq
DB search
MTAKELNKALETLFVDHSSENCITYEAVSELFEKNPTAAQAKSVLKLAEKNKRCLYTASE
HAKLMNEQEAEARRDAQRKLIENASGEEFDILKQHELMEWSRSDSPVRMYLREMGQIPLL
TKEEEIEISKKIEFGESIIIDAICSVPYLIDFILDYKEPLINRERRVKELFKSFEDEKDD
SDDDNDNDDDEGAEKKVSAKDKKRVELVVSSFKALEKAKKEWQKASEKLPEGAEDGELNE
EIVLFFLTASFKKKILKEKLLDLGPTSKLINELVKSMETSLKSDEGFEKELKRLEYKLPL
FNDLLRKNHREILDNITDLTKEDIAARVPEATMVGTYMEIKKLIQTKEASKGGFNMEPEK
LSDILEQIKRGKAISETAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVD
KFEYQKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIMRKYLQENGKE
PDVETIAEEVGLSVEKVKNVIKITKEPISLEAPIGSEEDGRFGDFIEDRTSLSPSDAILK
DDLKVQIEGVLEQLNEREKAVIKMRFGIMDDESDRTLEEIGKELNVTRERVRQIESSAIK
KLKHPKVGRKLKNYIEE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaaaagaactcaataaagccctcgaaaccctttttgtcgatcactcctccgaa
aactgtatcacctacgaggcagtttcggaactttttgagaaaaacccgacagcggcccag
gccaaaagcgtcctgaagcttgccgagaaaaacaagcgctgcctctacacggcttcggag
catgccaagctcatgaacgagcaggaagcagaagcacgccgtgacgcgcagcgcaaactc
attgagaacgccagcggcgaagagttcgacatcctcaaacagcacgagctgatggagtgg
tcccgctccgactccccggtacggatgtacctgcgcgaaatgggacagatcccgcttctg
accaaggaagaggagatcgagatctccaaaaagatcgagttcggtgaaagcatcattatc
gatgcgatctgttccgttccctacctgatcgatttcatcctcgactacaaagaaccgctt
atcaaccgcgaacgccgtgtcaaagagctcttcaaaagctttgaagacgaaaaagacgac
agtgacgatgataacgacaacgacgatgacgagggtgcagagaaaaaagtcagcgccaag
gacaaaaagcgcgtcgagcttgttgtcagcagcttcaaagccctcgaaaaagcgaaaaaa
gagtggcagaaagcctctgagaaactccccgaaggcgctgaagacggcgaactcaacgaa
gagattgtcctcttcttcctgacggccagcttcaaaaagaagatcctgaaagagaaactg
ctcgatctcggaccgacctccaagctcatcaacgaactcgtcaaatcgatggagacctcc
ctcaaaagcgacgaagggtttgaaaaagagctcaagcgcctcgagtacaagctcccgctc
ttcaacgacctgctgcgcaagaaccacagagagatcctcgacaacatcaccgatctcacc
aaagaggatatcgccgcacgggtccccgaagcgaccatggtcggtacctatatggagatc
aaaaaactgatccagaccaaagaggcctccaaaggcggcttcaatatggaacccgaaaag
ctctcggacatcctcgagcagatcaaacgcggtaaagcgatctccgagacggcaaagaca
cggatggcgaagtccaacctccgtctcgtcgtctccattgccaagcgctataccaaccgc
ggcctccccttcctcgacctgatccaggaaggcaatatcggtctgatgaaagccgtcgac
aagttcgagtaccagaaagggtacaagttctccacctacgccacctggtggatccgccag
gctatcagccgtgctatcgcggaccaggcgcggacgatccgtatcccgatccacatgatc
gaaacgatcaaccgtatcaacaagatcatgcgcaaatacctgcaggagaacgggaaagag
cccgatgtcgagacgatcgccgaagaggtcggcctctccgtcgagaaggtcaagaacgtc
atcaagatcaccaaagagccgatctccctcgaggcaccgatcggcagcgaagaggacggc
cgtttcggcgacttcatcgaagaccgcacctcgctctccccttccgatgccattctcaaa
gacgacctcaaggtgcagatcgagggcgtcctcgaacagcttaacgagcgcgaaaaagcc
gttatcaagatgcgcttcgggatcatggacgacgaaagcgaccgtacccttgaagagatc
ggcaaagagctcaacgtcacccgcgaacgcgtccgccagatcgagagcagtgcgatcaaa
aagctcaagcatcccaaagtcggccgtaaactcaagaactatatcgaggaataa
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