Thiomicrolovo subterrani: WCX49_09565
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Entry
WCX49_09565 CDS
T11234
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tsub Thiomicrolovo subterrani
Pathway
tsub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCX49_09565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsub03019
]
WCX49_09565
Enzymes [BR:
tsub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WCX49_09565
Messenger RNA biogenesis [BR:
tsub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WCX49_09565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
HEM4
UTP25_NTPase-like
Gag_p24
AAA_22
Cas3-like_C_2
CCDC106
Motif
Other DBs
NCBI-ProteinID:
XAU02160
LinkDB
All DBs
Position
complement(1837475..1838824)
Genome browser
AA seq
449 aa
AA seq
DB search
MSFSTLGLSEPLLRAVADTGYTEPTPIQAQAIPVVLGGKDLLAGAQTGTGKTAGFTLPML
QLLSQATPSKGKRPVRALVLTPTRELAAQVGQSVETYGKYLKLNSTVIFGGVNINPQINK
LRGGVDIVVATPGRLLDHANQKNIDLSRIELLILDEADRMLDMGFIHDIKKVLKLVPKKA
QKLLFSATFSDEIKTLADGLLHNPELIEVARRNTTSERVAQVVYPVKQDRKRALLSTLIN
TNGWEQVLVFTRTKHGANRLCKQLTSDGIPSEAIHGNKTQNARTKALAAFKERRVRVLVA
TDIAARGIDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGNEGEAVSLVCAEEADYLRNIE
KLIKASIPQKSVEGFETRLPEKTKSAAKPKTNSSSNKRPARNGNERTDAKPRQGQRDKKR
NAQNDRRKEQPMRAEDVAAYLSQMKAGAR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcaacactgggcttgtcagagcctcttttgcgtgctgtcgccgataccggc
tacactgaacccacccccatccaggcacaggcgatccccgtcgtgctcggcgggaaagat
ctccttgccggcgcccagacgggcacgggcaaaacggcgggctttaccctgccgatgctg
cagctgctctcgcaagcgacgccctccaagggcaaacgtcccgtccgtgcactggtgttg
acgccgacacgtgaactggccgcacaggtggggcagagcgtcgaaacctacggcaagtac
ctgaagctgaactcgacggtgattttcggcggggtcaacatcaacccgcagatcaataaa
ctgcgcggcggcgtggacatcgtcgtcgcgacgccggggcgcctgctcgaccatgcgaac
cagaagaacatcgacctttcgcgcatcgagctgctgatcctcgacgaagcggaccgcatg
ctcgacatggggtttatccacgacatcaagaaggtgctcaagctcgtcccgaaaaaggcg
cagaagctgctcttctccgccaccttctccgacgagatcaagacgctggccgacggcctg
ctgcacaatcctgaactcatcgaggtcgcccgccgcaacacgacgtccgaacgcgtcgcg
caggtcgtctacccggtcaaacaggaccgcaagcgcgcactgctctccacgctgatcaac
accaacggctgggagcaggtcctcgttttcacgcggaccaagcacggggcgaaccgcctg
tgcaagcaattgacatcagacggtatcccctccgaggcgatccacggcaacaagacacag
aacgcacgcaccaaagcgctggcggcctttaaggaacgccgggtccgtgtcctggtcgcg
acggacatcgcggcgcgcgggatcgatatcgaccagttgccgcacgtcgtcaatttcgag
ctgccgaacgtgcccgaggactatgtgcaccgcatcggccggaccggccgtgccggcaac
gaaggggaggccgtttcactggtctgcgccgaagaggccgattacctgcgcaacatcgag
aagctgatcaaagcgtcaattccgcaaaagagtgtcgaagggttcgaaacccggttgccc
gaaaagacgaaatctgcagccaaaccgaaaacgaacagttcctccaacaagcggccggca
cgcaacggtaacgagcgtaccgatgccaagccgcgccaggggcagcgtgataaaaagcgc
aacgcacagaatgaccgccgtaaagaacagccgatgcgtgcggaagatgtcgcagcctat
ctctcgcagatgaaagcgggagcgcgctga
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