Thiomicrolovo subterrani: WCX49_10960
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Entry
WCX49_10960 CDS
T11234
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsub Thiomicrolovo subterrani
Pathway
tsub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCX49_10960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsub03019
]
WCX49_10960
03009 Ribosome biogenesis [BR:
tsub03009
]
WCX49_10960
Enzymes [BR:
tsub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WCX49_10960
Messenger RNA biogenesis [BR:
tsub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WCX49_10960
Ribosome biogenesis [BR:
tsub03009
]
Prokaryotic type
rRNA helicases
WCX49_10960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Clathrin
Flavi_DEAD
Poxvirus_B22R_N
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XAU02424
LinkDB
All DBs
Position
2115823..2117328
Genome browser
AA seq
501 aa
AA seq
DB search
MQTPPIETLDDTAVPTASFDDFGLRDEILQSIRYAGFKVPSPIQQQAIPLVLEGRDVVGQ
AHTGTGKTAAFGLPTLSQMSLDRGVEALIIVPTRELANQVSDELFKYGKKLGIHTVTVYG
GSSYNRQIGLIERGAQVVIATPGRLKDILERNMLSDFAPSTVILDEADEMLDMGFLDDIN
TIFDFLPTDRQTLLFSATMPKPIKALAERILVNPAFVSITQEETTNKDIAQQYYVIEENE
RDDAIIRLLDAEELEKTIVFCRTKREVDRLSNVLSSVGYNAKGLHGDMEQRQRESVIRGL
KENAIDILVATDVAARGIHINDVSHVINYHIPFDPESYVHRIGRTGRAGQKGVAITLVTP
LEFKELQRIRKIVGTQMAHSYIPTKQQVQSKQMSRLVDEIEKQKIYEEATELFNALCDDM
DQTQIAYKLISMLMKNTNVKGPQSIGVPKQRLDKIMEAMERNDRGGRRQGGKPRRNGGYN
NRRRQDGDRNRGDRNRGGRRS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgcagacaccacccatcgaaacactcgacgataccgccgtaccgacggcctcctttgac
gacttcggtcttcgcgacgagatcctccagagcatccgctacgccggtttcaaagtcccc
agcccgattcagcagcaggccatccccctcgtcctcgaggggcgcgacgtcgtcggccag
gcccataccgggaccgggaaaacggcggctttcggtcttccgaccctgagccagatgagc
ctcgaccgcggcgttgaggcgctcattatcgtcccgacgcgtgaactcgccaaccaggtc
agcgacgagctcttcaaatacggcaagaagctcggtattcacaccgtcaccgtctacggc
ggcagctcctacaaccgccagatcggcctgatcgaacgcggcgcgcaggttgtcatcgcg
accccgggccgcctcaaagacatcctcgaacgcaacatgctcagcgatttcgccccctcc
accgtcattcttgacgaagcggacgagatgctcgacatgggcttcctcgacgacatcaac
acgatcttcgacttcctgccgacggaccgccagaccctgctcttttcggccacgatgccc
aaaccgatcaaggccctcgccgaacgtatcctcgtcaatccggcttttgtctccatcacc
caggaggagacgacgaacaaggacatcgcgcagcagtattacgtcatcgaggagaatgag
cgcgacgacgcgatcatccgcctgctcgacgccgaagagctggaaaagaccatcgtcttc
tgccgtaccaagcgcgaagtcgaccgtctttccaacgtcctctcctccgtcggctacaac
gccaaggggcttcacggcgacatggaacagcgccagcgcgaatccgtcatcaggggtctc
aaagagaatgcaattgacattcttgtcgccaccgacgttgcggcgcgcggtatccacatc
aacgacgtcagccacgtcatcaactaccatatccccttcgatccggagagctacgtccac
cgtatcggccggacgggacgtgcaggccagaaaggggtcgccattaccctggtaacgccg
ctggagttcaaagagctgcagcgtatccgcaagatcgtcggcacccagatggcccactcc
tacatcccgacaaaacagcaggtacagtccaaacagatgtcccgcctcgtcgacgagatc
gaaaagcagaagatctacgaagaggcgaccgaactcttcaacgcgctgtgcgatgacatg
gaccagacacagatcgcctacaagctcatctcgatgctgatgaaaaacacaaacgtcaaa
ggccctcagtcaatcggtgtcccgaagcagcgcctggacaaaatcatggaagcgatggag
cgcaatgatcgcggcggccggcgccagggcggcaaaccgcgccgcaacggcggctacaat
aaccgccgccgccaggacggcgaccgcaaccggggcgaccgcaaccgcggcggacgccgc
tcctaa
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