Thiomicrolovo sulfuroxydans: LOH54_00115
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Entry
LOH54_00115 CDS
T11233
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tsul Thiomicrolovo sulfuroxydans
Pathway
tsul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOH54_00115 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsul03019
]
LOH54_00115 (recQ)
03400 DNA repair and recombination proteins [BR:
tsul03400
]
LOH54_00115 (recQ)
Enzymes [BR:
tsul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOH54_00115 (recQ)
Messenger RNA biogenesis [BR:
tsul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOH54_00115 (recQ)
DNA repair and recombination proteins [BR:
tsul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOH54_00115 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
AAA_22
SKI
Motif
Other DBs
NCBI-ProteinID:
UFS62552
LinkDB
All DBs
Position
21743..23536
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AA seq
597 aa
AA seq
DB search
MTDHATDKYSVLKDRFGHNAFRPLQEEAVDAILAGRDLLMILPTGGGKSLSYQLPALLME
GTTVVISPLLALMHDQVQSLKAQGMRAEMLSSMQTAEESSEIVRRLYAGEIDFLYLSPER
LNTEGMRNILSSIRLNYFVIDEAHCISEWGHEFRADYRALSQLRDFFPGIAIAAFTATAT
SHVREDILRLLRLNDPKVLQGQIYRDNLQITVRHRIKDGYDQLRDFLDDHKEESGIVYAF
SRKSVEAVAHFLQQKGYAAAAYHAGMPTEQRNAVFHDFVHDQVRIIVATIAFGMGIDKSN
IRYVFHMSLPKTVENYYQEIGRAGRDGDHADVVMLFGAQDLIQQKRFVEMNEDEQYKAHL
MQKLGAVHRYASAETCRHQQLAEYFGDRIEPCGTHCDNCLEPEYDRRDITTEAQMLLSAV
YRTGQRFGKSYLVDVLRGSREQKVLANGHDELSVYGVGEALNKKQWLVLIDRMLEIGAVD
LNEHHGLFLTQEGLAVLKGEVPVLIRADRLNVRAKTVKKAAPESFDYDTELFEALRALRF
EIAQEHGVPPYVVFGDKTLKEMAASRPQSKAQMLEVGGVGEVKFERYGAQFLVLLQS
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcacgctaccgataaatattccgtactcaaagaccgtttcggtcacaacgcc
tttcgcccgctgcaggaggaggccgttgatgccattctcgccggccgcgacctgctgatg
atcctgcctaccggcggcgggaagtcgctctcctaccagctgccggcgctgctgatggag
gggacgaccgtcgtcatctccccgctgcttgcgctcatgcacgaccaggtccagagcctg
aaagcccaggggatgcgcgcggagatgctctcctcgatgcagacggcggaggagagcagc
gagatcgtgcgccgcctctacgccggggagatcgattttctctacctctcccccgaacgc
ctcaatacggaggggatgcggaacatcctttcctcgattaggctcaactactttgtcatc
gacgaggcgcactgtatcagcgagtgggggcacgagttccgggccgactaccgcgccctg
tcgcagctacgggactttttccccgggatcgctatcgccgcgttcaccgcgacggccacg
tcgcatgtgcgcgaggacatcctgcgcctgctgcgcctgaacgaccctaaagtcctgcag
ggacagatctaccgcgacaacctccagatcaccgtgcgccaccgcatcaaagacgggtac
gaccagctccgggactttctcgacgaccacaaagaagagagcggcatcgtctacgccttc
tcccgcaagagcgtcgaggccgtcgcgcactttctccagcagaaaggatatgcggcggcg
gcctatcatgccgggatgccgacggagcagcgcaacgctgtttttcacgacttcgtgcac
gaccaagtccggatcatcgtcgcgacgatcgccttcgggatgggcattgacaagagcaac
atccgctacgtttttcacatgagcctgcccaagaccgtcgagaactactaccaggagatc
gggcgggcggggcgcgacggcgaccatgccgacgtcgtcatgcttttcggggcccaggac
cttatccagcagaagcggttcgtcgagatgaacgaggacgagcagtacaaggcgcacctg
atgcagaagctcggcgcggtgcaccgctacgcttcggcggagacctgccgtcaccagcag
ctcgccgaatacttcggcgaccgcatcgagccctgcgggacgcactgcgacaactgcctg
gagccagagtacgaccggcgcgacatcacgaccgaggcgcagatgcttctctcggctgtc
taccggacggggcagcggttcggcaagagctacctggttgacgtcctgcgcggctcgcgg
gagcagaaggtactcgccaacgggcatgacgaactctccgtttacggggtcggcgaggca
ctgaacaagaagcagtggctcgtgctcatcgaccggatgctcgagataggggcggtggac
ctgaacgagcaccatggtctctttctcacccaggagggtctggccgtgctcaaaggcgag
gtgccggtccttatccgtgccgaccgtctcaacgtccgggccaaaaccgtgaaaaaggcc
gcgccggagagtttcgactatgacacggagcttttcgaggcactgcgggcactgcggttc
gagatcgcccaggagcacggggtgccgccctatgtcgttttcggggacaaaaccctcaag
gagatggcggcatcgcggccgcagagcaaggcgcagatgcttgaggtgggcggcgtcggc
gaggtgaaattcgagcgctacggggcgcagtttttggtgctgctgcagagctga
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