Thiomicrolovo sulfuroxydans: LOH54_03045
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Entry
LOH54_03045 CDS
T11233
Name
(GenBank) AAA family ATPase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
tsul Thiomicrolovo sulfuroxydans
Pathway
tsul03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LOH54_03045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsul03400
]
LOH54_03045
Enzymes [BR:
tsul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LOH54_03045
DNA repair and recombination proteins [BR:
tsul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LOH54_03045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
UvrD_C_2
Viral_helicase1
SH3_13
AAA_16
AAA_11
AAA_22
PIF1
OB_YrrC
AAA
Mg_chelatase
Ploopntkinase3
HHH_5
AAA_5
UvrD_C
Helicase_RecD
NACHT
DUF87
NPHP3_N
ABC_tran
TraI_hel_assoc_N
AAA_18
nSTAND3
AAA_12
Motif
Other DBs
NCBI-ProteinID:
UFS63108
LinkDB
All DBs
Position
604221..606425
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AA seq
734 aa
AA seq
DB search
MKLIGQIEKIFYEDEGFFVGVLGTGEKISGHYFESSVGSIENAAVTLEGEYVEHPKYGRT
FKFHTLNVNQHELFFFLNRVVKGFPKKVTAELIERFGEEGVIEILDNDIEKLTEFAGIKQ
KRLERIQGRWKQFRSMRELGSLLAPYNVTPAMLTTIAGAMKEVNDPVAAIRRNPYILTNV
EGIGFRRADELALKMGVSEADERRLACAMEYAIAQRCEREGNSCLGKAELFAELDVLLQE
GAVPQRYEAVLGEHIADESIRPLSGELLAPVRLYEAERFIHEEFRRRLKRHDEPLTGDLE
AFLAEASFTPGSEQREALETLNGGTRLLCLVGYAGTGKSTTAKLLLDLLAERHGHEQMIT
CALSGIASQRIGEVSGYESATIQSLLVRFEGRDAMPYKVVLIDEASMINAPLFARLLSKC
HRDATIIIVGDDAQLPPIGAGDVLGDIIRFNLMPVVTLTKIYRQSETQAIPAIADAVRHS
EIPALFGDYDDFRFLPIASREFPDREAHAGAVLAALAEAAVQAIPACREHLKQKELYAYL
TAFQVISPMKGGTLGTENLNRVLQEYFNPSPRQTVQRGDRRFALMDKVVHTKNDNMPAWS
QEGYKAEAPSEKHRIFNGMLGLLFRIDEEAEQVYVVYPLEEMVVCYDYTQLTSHLMLAYA
LTVHKVQGMEYGTVAMPLTFSHYAMLDRKLLYTAITRAKEHCLIVGETDGFTRALLRGET
VSRRTVLQYLADVH
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcatcggccagatcgagaagatcttctacgaggacgagggcttctttgtcggc
gtactcgggacgggcgagaagatcagcggccactactttgaaagcagcgtcggcagcatc
gaaaatgcggccgtcacccttgagggtgagtatgttgagcaccccaaatacggccgcacc
tttaaattccataccctcaacgtcaatcagcatgagctttttttctttctcaaccgtgtc
gtaaagggattcccgaagaaggtgacggcggagctgatcgagcgcttcggtgaagaggga
gtgatcgaaattctcgacaacgacatcgaaaaactgacggaattcgcgggcatcaaacag
aagcgtcttgaacggatacaggggcgctggaagcagttccgttccatgcgcgaattgggg
agccttctggccccctataatgtaacccccgccatgttgacgacaatcgccggcgcgatg
aaagaggtcaacgatcctgttgcggcgatccgaaggaatccctatatcctgaccaatgta
gaggggatcgggtttaggcgtgccgatgagctggcgctgaaaatgggggtctccgaagcg
gatgaacggcgtctcgcctgcgccatggagtatgcgatcgcacagcgctgcgaacgcgaa
ggcaacagctgcctgggtaaagcggagttgtttgcagaactggatgtcctgctgcaggag
ggggcggtcccgcagcgttatgaggccgtgctgggagaacatatcgcggacgagtcgata
cgtccgctgagcggagaactgcttgccccggtacggctgtacgaggccgaacgcttcatt
cacgaggagtttcgtcgccgtttgaaacggcacgacgaaccgttgacaggcgatctcgag
gcctttttggcggaggcgtcctttacgccggggtcggagcagcgcgaagcgctcgagacg
cttaacggaggaacgcggctgctctgtctggtgggatacgccgggacggggaagagcacg
acggcaaagctgctgctggacctactggcagagcggcatggacatgaacagatgatcacc
tgtgcgctcagcggcattgcttcgcagcgtatcggggaggtgagcgggtacgagagtgcg
acgatccagagccttttggtgcgcttcgaaggccgcgacgccatgccctacaaggtcgtt
ctcattgatgaagcttctatgatcaacgcgccgctcttcgcccggctgctcagcaagtgc
caccgggacgcgacgatcatcattgtcggtgacgacgcccagctccctccgatcggtgct
ggggacgtgctgggtgacatcatccgtttcaatctgatgccggtggtgacgctgacgaag
atctaccgccaaagcgagacacaggcgatcccggccatcgccgatgccgtgcggcacagc
gagatccccgcacttttcggtgattacgacgacttccggttcttgccgatcgcttcgcgg
gagttccctgaccgcgaggcgcatgccggggcggtgttggccgcattggcggaagcagcg
gtgcaggcgatcccggcatgccgcgaacacctgaaacaaaaagagctctatgcctacctt
acggccttccaggtgatcagcccgatgaagggcgggaccctcggcacggaaaatctcaac
cgggtgctgcaggaatacttcaacccctctccccgccagacggtccagcggggcgacaga
cggtttgcactgatggacaaggtcgttcacacgaaaaacgacaacatgcccgcctggagc
caggaggggtacaaagcggaagccccttcggagaagcatcgcattttcaacgggatgctg
gggctgctgttccggatcgacgaggaggcggagcaggtctacgtcgtctatccccttgaa
gagatggtcgtctgctacgactacacgcagctcacttcccatctgatgcttgcctacgcc
ctgaccgtgcacaaagtccaggggatggagtacggcaccgttgcgatgccgttgaccttc
agccactacgcgatgctggaccggaaactgctctatacggcgatcacccgtgcgaaagag
cactgcttgatcgtcggtgagacggatgggtttactcgcgctctgcttcggggggaaacc
gtatcgcgccgtacggtgctgcagtatctggcagacgtacattag
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