Thiomicrolovo sulfuroxydans: LOH54_10665
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Entry
LOH54_10665 CDS
T11233
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tsul Thiomicrolovo sulfuroxydans
Pathway
tsul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOH54_10665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsul03019
]
LOH54_10665
03016 Transfer RNA biogenesis [BR:
tsul03016
]
LOH54_10665
Enzymes [BR:
tsul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LOH54_10665
Messenger RNA biogenesis [BR:
tsul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LOH54_10665
Transfer RNA biogenesis [BR:
tsul03016
]
Prokaryotic type
tRNA degradation factors
LOH54_10665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
S1_2
Motif
Other DBs
NCBI-ProteinID:
UFS62109
LinkDB
All DBs
Position
complement(2080296..2082473)
Genome browser
AA seq
725 aa
AA seq
DB search
MDYDVLVAVENRTEEYALTGVARQANGSAWLKAGNTVVLATVVIDETEFVEEGFLPLTVQ
YIEKAYAAGKIPGGFIKREAKPSDFETLTSRIIDRSLRPLFPKGFANPVQITVMVLSADE
DADLQVLGLNAASAALYVSDIDIDIPVSAVRVAKVDGEVLFNPTLPQLKNSTLDLFLAGT
ESDLLMIEMRVQGSVETELLDTMMVDPLVDPALAAETIARYRSNAMGEDDFIVLLSEAQQ
LLATANVSYAKAFAPFKKETFKLTCIAAEPDEHLMAYVREQHSDDIAAAIAQMARTERST
ALRNLRKKILDAEPEFDEHALKKAIEAVKRETVRVQILQTQTRADGRRLDEVRPISILTN
VLPSVHSSCLFTRGQTQALVTLTIGGNKDAQMYEELTDSSAQYESFMVHYNFPGFSVGEA
SPVQPPRRRELGHGNLAKRALEPVLEAPGQTVRLVSEILESNGSSSMATVCGGYMALKAA
DLETTDPIAGVAMGLVSEGDLHMVLTDITGLEDHDGDMDFKVAGSKEGITALQMDIKLGG
ISLELLKTALYQAKAGRAHIIDIMADAENKIELSEELPGSDFFSIDPDRVADVIGQAGKT
IREIIEKFEVAIDIDKKAGSVKVTGKNRDGVKGAREHIEQIVSVPKMEKPEYHVGDIVKG
RVKKIVDFGAFIELPGGVDGLLHISKISDSHVRNVSDVLSEGDDIDVEILEFKGTKISLG
RAPAA
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggattatgatgtactggtagccgtcgagaacagaacggaagagtatgcgcttacaggc
gtggcccgacaggcaaacggaagcgcatggctcaaggccggcaacacggttgtcctggcc
accgttgtcatcgacgagaccgaattcgtcgaagaggggtttctgccactgacggtgcag
tacatcgagaaagcgtacgccgcgggcaagatcccgggcggtttcatcaagcgcgaggcc
aaaccgagcgatttcgaaacactgacttcccgtatcatcgaccgctccctgcgtccgctc
ttccctaaagggttcgccaaccccgtccagatcaccgtgatggtgctcagcgcggatgaa
gatgccgacctccaggtgctcggcctcaacgccgcctcggcggccctgtatgtctccgac
atcgacattgacatccccgtcagcgccgtccgtgtggcgaaggttgacggagaggtcttg
ttcaacccgacgctgccgcagcttaaaaacagcaccctggacctcttcctcgcgggaacg
gagtcggacctgctgatgatcgagatgcgggttcagggttcggtggagacggagctgctc
gacacgatgatggtcgacccgctcgtcgatccggcgcttgccgccgagacgatcgcccgc
taccgcagcaacgcgatgggcgaggatgatttcatcgtcctgctttccgaagcccagcag
ctgctggcgacggccaacgtctcctatgcgaaggcgttcgccccgttcaagaaagagacc
ttcaaactcacctgcatcgccgcggagccggatgagcacctgatggcctacgtccgcgag
cagcacagcgacgatatcgccgcggccatcgctcaaatggcgcgcaccgagcgctccacg
gccctgcgcaacctgcgcaaaaagatcctcgatgcggaaccggagttcgacgagcacgcc
cttaaaaaagcgatcgaagcggtcaagcgcgaaacggtccgcgtacagatcctgcagacg
cagacccgcgcagacggccgccgtctcgacgaggtacgcccgatcagcattctgaccaac
gttcttccctccgtccactcctcctgtctctttacccgtggccagacccaggccctggtg
acactgaccatcggcggcaacaaagacgcccagatgtacgaggagcttaccgacagttcg
gcgcagtacgagagctttatggtgcactacaacttcccgggcttcagcgtcggggaagcg
tcgccggtccagccgccgcgccgccgggagctgggacacggcaacctcgccaagcgcgcc
ctcgaaccggtcctggaggccccgggccagaccgtccgcctcgtctccgagatcctcgag
tccaacggctcttcctccatggcgaccgtctgcggcggttatatggcactgaaagcggcg
gacctggagacgaccgatccgatcgccggcgtggcgatgggactggtcagcgaaggggac
ctgcacatggttctgaccgacattaccggcctcgaggaccacgacggggatatggacttc
aaggtcgcgggctccaaagaggggattacggcgctgcagatggacatcaagctcggcggc
atctccctggaactgctcaaaacggccctctatcaggcaaaggcggggcgcgcccacatc
atcgatatcatggccgatgcagagaacaagatcgaactgagcgaggagctgcccggcagt
gacttcttcagcatcgatcccgaccgtgtcgccgatgtcatcggccaggcaggcaagacg
atcagagagatcatcgagaagttcgaggtcgcgatcgatatcgacaagaaggccggtagc
gtgaaggtgacgggcaagaaccgcgacggggtcaagggcgcgcgcgaacatatcgagcag
atcgtctccgtaccgaagatggaaaaacccgagtaccatgtcggcgacatcgtcaagggg
cgggtcaagaagatcgtcgatttcggcgccttcatcgaactgcccggcggcgtcgacggc
ctgctgcacatctcaaaaatctccgattcgcacgtgcgcaacgtttccgatgttctgagc
gagggggacgacatagacgtcgagatcctcgagttcaaagggaccaaaatcagcctcggc
cgcgccccggccgcctaa
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