Thiomicrolovo sulfuroxydans: LOH54_11885
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Entry
LOH54_11885 CDS
T11233
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tsul Thiomicrolovo sulfuroxydans
Pathway
tsul03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOH54_11885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsul03021
]
LOH54_11885
03400 DNA repair and recombination proteins [BR:
tsul03400
]
LOH54_11885
Enzymes [BR:
tsul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOH54_11885
Transcription machinery [BR:
tsul03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOH54_11885
DNA repair and recombination proteins [BR:
tsul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOH54_11885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_A_bac
RNA_pol_L
RNA_pol_L_2
PASTA
TRAPP
ORC1_wHTH
Senescence
Motif
Other DBs
NCBI-ProteinID:
UFS62339
LinkDB
All DBs
Position
complement(2332287..2333279)
Genome browser
AA seq
330 aa
AA seq
DB search
MKKIKTAPLLPEEFVVEQISDTEANVIAYPFETGYAVSLAHPLRRFLLSSSVGYAPIAIK
IEGAKHEFDSVRGMLEDISDFIINLKSIRFKLKNDAKEATIDYSFVGPCEIKGSDLINDD
VDVVTPDAFLATLNEDATLNFSLKIFQGIGYVPSEDIRDEIEEGYIALDAFFTPVRKATY
AIQNVLVEDNPNFEKVVLNIVTDGQISPLDAFRNALNVMHAQMAVFSSEISIQSPATIER
AEASEEIGKLTAPIEELGLSARSFNCLDRADLKYIGEIVLMSQNDLKNVKNLGKKSYDEI
VEKLEEAGFQVGQEMSDETISVLKKKIESE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagatcaaaacagctccgcttctgcccgaagagttcgtcgtcgagcagatcagc
gataccgaagcgaatgtcattgcctatccgttcgagacaggctatgcggtttcactggcg
cacccgctgcgccggttcctgctgagcagctcggtaggctatgcgccgatcgcgatcaag
atcgagggcgccaagcacgagttcgactccgtgcgcggtatgctcgaagatatttctgac
ttcatcatcaacctcaaaagcattcgtttcaaactgaaaaacgatgccaaagaggcgacg
atcgattacagcttcgtcggaccgtgcgagatcaaaggaagcgacctgatcaatgacgac
gttgacgttgtcacaccggacgctttcctcgcgacgctcaacgaagatgcgacgctgaac
ttctcgctgaagatcttccaggggatcggttacgtcccgagcgaagatatccgcgacgaa
atcgaagagggctacatcgccctcgacgcgttctttacgccggtccgcaaagcgacctac
gcgatccagaatgtcctcgtcgaagacaacccgaactttgagaaggttgtcctgaacatc
gtcaccgacggtcagatcagcccgctggatgctttccgcaacgccctgaacgtcatgcat
gcgcagatggcggtcttcagcagcgagatcagcatccagtcaccggcaacgatcgaacgc
gccgaagcgtccgaagagatcggcaagctgacggcaccgattgaagagctcggcctctcc
gcacgcagcttcaactgcctggatcgcgccgacctgaagtacatcggtgaaatcgtcctg
atgagccagaatgaccttaaaaacgtcaagaaccttggcaaaaaatcgtatgacgagatc
gttgaaaagctcgaagaagccggcttccaggtcggtcaggagatgagcgatgaaacgatc
agcgtactgaaaaagaaaattgaatctgaataa
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