Thiomicrolovo sulfuroxydans: LOH54_12445
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Entry
LOH54_12445 CDS
T11233
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tsul Thiomicrolovo sulfuroxydans
Pathway
tsul03410
Base excision repair
tsul03430
Mismatch repair
tsul03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LOH54_12445 (recJ)
03430 Mismatch repair
LOH54_12445 (recJ)
03440 Homologous recombination
LOH54_12445 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsul03400
]
LOH54_12445 (recJ)
DNA repair and recombination proteins [BR:
tsul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LOH54_12445 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LOH54_12445 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LOH54_12445 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Cu-oxidase_4
Motif
Other DBs
NCBI-ProteinID:
UFS62443
LinkDB
All DBs
Position
complement(2434025..2435623)
Genome browser
AA seq
532 aa
AA seq
DB search
MPKAPDAPLLDKRALEALLRSRFASGFSKLSDIPDPAGLTDASKAAKRIADAIRKGERVA
LVGDYDVDGVTATAITTLFFRQIPYPLEVTIPNRFTDGYGVSERVLERIDADVVFTVDNG
INAFAAAEVCKARGIDLIITDHHTPSEKLPDAYAVVDPKRADDHYAFPEICGAQVAWLLM
ALIKKELGLSIDMGQFLELLALAIIADVMPLMGINRAIVQAGLAQMERSGRPFSVIVREA
LGKTKLGAEDIGFQIAPRINAAGRLEDASLALELLTAPDEKTAFRQFELLTQLNVMRKAI
EAEATEEAIALVRPDDRVIVVAHEGWHEGVVGIVAARLVQRFERPAIVLSIEEGRAKGSA
RSLGNVSIYDLIASQEGLLEKFGGHMMAAGLSLRAEDVDAFRAGINAEAATLDPEDFLPV
EEIVGQLDTGSVDFELLEILERYEPYGEGNPRPRFLARDAEVVGIRYLGSDGDHSKVSLR
LFRHERETYDLMAFRRKLERPESGRLTCSYTLARNEWGGRVSIQMMLERLYG
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggcgcctgacgctccgctgctggacaagcgtgccctggaggcactgctgcgt
tcgcgttttgcctccggtttttccaaactctccgatatccccgaccccgccggtctgacc
gatgcttcaaaggccgcgaaacggatcgccgatgccatccgcaaaggcgaacgcgttgcc
ctggtgggggattacgacgtcgacggcgtgaccgccacggcgatcacgaccctctttttc
cggcagatcccctatccgctcgaggtgaccatacccaatcgtttcacagacggctacgga
gtttccgaacgcgtgctcgagcgcattgacgccgacgtcgtgtttaccgtcgacaacggt
atcaacgccttcgcggcggcggaggtgtgcaaagcgcgcggcatcgatctgatcatcacc
gaccaccatacgccctccgagaaactgcctgacgcctacgccgtcgtcgacccgaagcgc
gctgacgaccactacgctttcccggagatctgcggggcgcaggtggcatggttgctgatg
gcgctgatcaagaaggagctggggctctccatcgatatggggcagttcctcgaactcctg
gctctggcgatcatcgccgacgtgatgccgcttatggggatcaaccgtgcgatcgtgcag
gcggggctcgcccagatggagcgctccggccgccccttctccgtcatcgtccgcgaagca
ttggggaaaacgaaactgggggccgaggatatcggtttccagatcgcgccgcgcatcaat
gccgccggccgtctggaggatgcttctttggccctggagctgttgaccgcgccggatgag
aagacggccttcaggcagtttgaactcctgacgcagctcaacgtcatgcgcaaagccatc
gaggcggaggcgacggaggaggccattgccctggtccggcccgacgaccgggtcatcgtc
gtcgcccacgaagggtggcacgagggggtcgtggggatcgtcgccgcgcggctggtacag
cggtttgaaaggccggccatcgtgctcagtatcgaggagggacgggccaaggggagtgcg
cgttcgctcggcaacgtcagcatctacgacctgatcgcctcgcaggaggggctgcttgag
aagttcggcggccatatgatggctgcggggctctccctgcgcgccgaggatgtcgacgcc
tttcgcgccgggatcaacgccgaagcagcaacgctcgatccggaggatttcctgccggtc
gaagagatcgtcgggcagctcgacacgggcagcgtggatttcgaactgttggagatcctg
gagcgctacgagccctacggcgagggcaacccccgcccgcgtttcctggcacgggatgcc
gaggtcgtcggcatccgctacctcggcagcgacggggaccactccaaggtcagcctgcgg
ctcttccggcacgagcgcgagacatatgacctcatggccttccggcgaaagctggagcgg
cccgagagcggccgtctcacctgcagctataccctggcccgaaacgaatggggcggacgg
gtctccatccagatgatgcttgaacgcctctacggctag
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