Thiomicrolovo sulfuroxydans: LOH54_12650
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Entry
LOH54_12650 CDS
T11233
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tsul Thiomicrolovo sulfuroxydans
Pathway
tsul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOH54_12650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsul03019
]
LOH54_12650
Messenger RNA biogenesis [BR:
tsul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOH54_12650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_6
MupG_C
DUF4443
DUF6624
Motif
Other DBs
NCBI-ProteinID:
UFS62479
LinkDB
All DBs
Position
complement(2471357..2473441)
Genome browser
AA seq
694 aa
AA seq
DB search
MSEETQAPVAEAKKNTENKPAQNREGEPRRRRSSNRNRSRSRQKPKEGEAKKEGEGQSQS
QNRSRGGRGGNRGENRGENRGENRGENRGESRAKSGGGRSGGNRNRRRNAPAPTEQSLLE
NARQNEASQRVRVSPYTKIDGEVKAKVRITPLGGLGEIGGNMMVMETDNEAILIDVGMSF
PDEEMHGVDILVPDFTYVREIKDKIVGVIITHAHEDHIGAVPYLYKEMQFPLYGTALPLA
MIGNKFDEHHLKEFRRYFRPIEKRVVYQIGNDFQVEWMHMTHSIIDSSSIAVTTEAGTVI
HTGDYKIDHTPVDGFPADLHRLASYGEKGVLALLSDSTNSYNKEITPSELTVAPALDRVF
SKTKGRIILSTFSSNIHRVFQAIQAGIKYGRKVCVIGRSMERNLEVAMQYEYIKLPKNIF
VDADDVSRMNDKDVLIITTGSQGEPNSALFRTAIGEHRHIKIKPGDLIILSSRAIPGNEG
SISQMLNHLERAGATVARDRDLHVSGHGGAEEQKLMLRLVQPKFFLPIHGEYNHVMRHRE
TGIACGVPERNIHLMSDGECVEVTPKYMRKVKTVKSGKTYIDNQSNNLIEDDIVIDRQKM
ATEGMVMIVAQVSKADSHLISKPKVSSFGLVPDKQDKAFAQEMEDVLEHFLTNLKPGIIE
NPKAMENDLRQVVRKHIYRKMKKYPLITPTIFVM
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagaaacacaagcccctgtcgcagaagcgaagaaaaatacagaaaacaaaccg
gcccagaaccgtgaaggcgaaccgcgccgccgccgttcatccaaccgcaaccgcagccgc
agccgtcagaaacccaaagagggtgaagcgaaaaaagagggcgaaggccagagccagagc
cagaaccgcagccgcggcggccgcggcggcaaccgtggggagaaccgtggggaaaaccgt
ggggaaaaccgtggggaaaaccgtggcgaaagtcgcgcgaaaagtggcggcggacgttcc
ggcggcaaccgcaaccgccgccgcaacgccccggcaccgacggagcagagcctgctggag
aatgcgcgccagaacgaggcgtcgcagcgcgtccgtgtcagtccgtatacgaagattgat
ggggaggtgaaggcgaaggtccgtatcactccgctgggcggtctcggcgagatcggtgga
aacatgatggtcatggagacggataacgaagcgatcctgatcgatgtcgggatgagtttc
ccggacgaagagatgcacggcgtcgatattcttgtcccggatttcacctatgtccgcgag
atcaaagacaagatcgtcggcgtcatcattacccacgcccacgaagaccatatcggcgcg
gtcccttacctctacaaagagatgcagttcccgctgtacggtacggcgcttccgctggcg
atgatcggcaacaagttcgacgaacaccatctcaaagagttccgccgctacttccgcccg
attgagaagcgcgtcgtctaccagatcgggaacgatttccaggtcgagtggatgcacatg
acccactccatcatcgactcctcttctatcgcggtgacgacagaggcgggaacggtcatc
cacacgggtgactacaaaatcgaccatacgccggtcgacggtttcccggcggacctgcac
cgtctggcctcctacggcgagaagggggtcctagcgctgctttcggattcgacaaactcg
tacaacaaagagatcacgccgagcgaactgacggtcgccccggcgctggaccgcgtcttc
tcgaaaacgaaagggcgcattatcctctcgacgttcagctcgaacatccaccgcgtcttc
caggcgatccaggcgggtatcaagtacgggcgcaaggtctgcgttatcggccgttccatg
gagcgcaacctcgaagtggcgatgcagtacgagtacatcaagctgcccaaaaacatcttc
gtcgatgcggatgacgtcagccggatgaacgacaaggacgtcctcatcatcaccacgggt
tcgcagggagagccgaactcggcactgtttagaacggccatcggcgagcaccgccatatt
aagatcaagccgggcgacctgatcatcctctcctcccgggcgatcccgggcaacgagggc
tctatttcgcagatgcttaaccacctcgagcgtgccggcgcgaccgtcgcccgcgatcgc
gatctgcacgtctccggtcacggcggggcggaagagcagaagctgatgctgcgtctggtg
cagccgaaattcttcctgccgatccacggcgaatacaaccacgttatgcgccacagagag
acgggaatcgcctgcggggtccccgagcgcaacatccatctgatgagtgacggcgagtgt
gtcgaagtgacgccgaagtatatgcgcaaggtcaaaaccgtcaaatcaggcaagacctac
atcgacaaccagagcaacaacttgatcgaagacgacatcgtcatcgaccgtcagaagatg
gcaacggaggggatggtcatgatcgtcgcccaggtcagcaaagcggattcgcaccttatc
tccaagccaaaggtcagcagtttcggtctggtgccggacaagcaggacaaagcgtttgcc
caggagatggaagatgtcctggaacacttcctaaccaatctcaagccggggatcatcgaa
aaccccaaagcgatggagaacgatctgcgccaggtcgtccgcaagcatatctatcgcaaa
atgaaaaagtatccgctgattacgccgacgatcttcgtcatgtga
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