Terricaulis silvestris: DSM104635_01120
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Entry
DSM104635_01120 CDS
T06781
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tsv
Terricaulis silvestris
Brite
KEGG Orthology (KO) [BR:
tsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsv03016
]
DSM104635_01120 (rtcB)
Enzymes [BR:
tsv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DSM104635_01120 (rtcB)
Transfer RNA biogenesis [BR:
tsv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DSM104635_01120 (rtcB)
Prokaryotic type
tRNA splicing ligases
DSM104635_01120 (rtcB)
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Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Tc-38
Motif
Other DBs
NCBI-ProteinID:
QGZ94302
UniProt:
A0A6I6MRP6
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All DBs
Position
complement(1153003..1154211)
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AA seq
402 aa
AA seq
DB search
MSGYEEIQGAAAPIKAWISGVPVEHAAENQLRNVASLPFIHSHIAVMPDVHFGIGATVGS
VIPTKGAIIPAAVGVDIGCGMMAVRTSLTANDLPDSLSRLRGAIERNVPHGNGPRGNHND
TPSSVETTYRDSGLDDRYRAIIDKHPKASAKSQTGQLATLGGGNHFIEVCLDEEDRVWVM
LHSGSRGSGNAIGKYFIERAREELLQRELGYHVPDKDLAFFMEGEELFDDYVAAVGWAQD
YARTNREVMMERTLRALRDNLPKFKLEKHAVNCHHNYVARERHFGADVWVTRKGAVRAGV
GELGIIPGSMGAKSFIVCGKGNEDSFCTCSHGAGRAMSRTEAKRRFTLADHRKATEGVEC
RKDEGVIDETPMAYKDIDAVMAAQSDLIDVVHTLRQVVCVKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgtctggctacgaagaaattcaaggcgcagctgcgccgatcaaggcctggatcagcggc
gtgccggtagagcacgcagccgagaaccagctgcgcaatgttgcgtcgctgccgttcatc
catagccacatcgcggtgatgccggacgttcacttcggtattggcgcaaccgtgggctcg
gtgatcccgaccaagggcgcgatcatcccggccgctgtcggcgtcgacatcggctgcggg
atgatggctgtgcgtacgtcgctcacagcgaacgacctgccggactctctttcacgcctc
cgcggcgcgatcgagcggaacgtgccacacggcaacggcccgcgtggcaaccacaacgac
acgccgtcttcggtggagaccacgtaccgtgactccggcctcgacgatcgctaccgcgcg
atcatcgataagcacccgaaagcgtcggcgaagtcgcaaaccggtcagttggcgacgctc
ggcggcggcaaccacttcatcgaggtttgcctcgacgaagaggaccgcgtgtgggtgatg
ctgcactcgggctcgcgcggctcgggcaacgcgatcggcaagtacttcatcgagcgcgct
cgggaagaattgctgcagcgcgaactcggctaccacgtgccggacaaggacctcgctttc
ttcatggaaggcgaagagctgttcgacgattacgtggcggcggtcggctgggcgcaagac
tacgcgcgcaccaaccgcgaagtgatgatggagcgcaccctgcgtgcgctccgtgacaac
ctgccgaagttcaagctcgagaagcacgccgtgaactgccaccacaattacgtggcgcgt
gaacggcacttcggcgccgacgtgtgggtgacccgtaagggcgccgtgcgcgcgggcgtg
ggcgagcttggcatcatccccggctcgatgggcgcgaagtcgttcatcgtgtgcggcaag
ggcaacgaagattcgttctgcacctgctcgcacggggccggccgcgccatgtcgcgcacc
gaggcgaagcgccgcttcacgttggcggatcaccgcaaggcgaccgaaggcgtggagtgc
cgcaaggacgaaggcgtgatcgacgaaacgccgatggcctacaaggacatcgacgccgtc
atggccgcgcaatcggacttgatcgacgtggtgcacacgctgcgccaagtcgtgtgcgtg
aagggctga
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