Terricaulis silvestris: DSM104635_03167
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Entry
DSM104635_03167 CDS
T06781
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tsv
Terricaulis silvestris
Pathway
tsv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSM104635_03167 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsv03021
]
DSM104635_03167 (rpoC)
03400 DNA repair and recombination proteins [BR:
tsv03400
]
DSM104635_03167 (rpoC)
Enzymes [BR:
tsv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSM104635_03167 (rpoC)
Transcription machinery [BR:
tsv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSM104635_03167 (rpoC)
DNA repair and recombination proteins [BR:
tsv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSM104635_03167 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QGZ96309
UniProt:
A0A6I6MNN7
LinkDB
All DBs
Position
complement(3061670..3065836)
Genome browser
AA seq
1388 aa
AA seq
DB search
MNAMNQDLINNTFGNQPPAPVFDQIKISIASPEQIRSWSFGEIKKPETINYRTFKPERDG
LFCARIFGPIKDYECLCGKYKRMKYKDIICEKCGVQVTLQRVRRERMGHIELAAPVAHIW
FLKSLPSRIALMLDMALKDIERVLYFEQYIVLEPGLTPLEAKQLLTEEDYIRAQDEYGED
SFTASIGAEAVRELLMALNLEKEAEQLRKEIAESTSELKPKKLAKRLKLVEAFIRSGNKP
EWMILTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRN
EKRMLQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSV
IVVGPDLKLHQCGLPKKMALELFKPFIYARLDIKGLSGTVKQSRRMVEKERPEVWDVLEE
VIREHPVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSL
EAQLEARVLMMSTNNILSPANGKAIIVPSQDIVLGLYYLSTVKDGEPGEGKVFGTIGEIE
SALEAGVVTLHSKIKARFETVDADNKPLRLTIDTTPGRMKLGELLPRHPKISHKLLDQTM
TKKEVGNLIDQVYRFCGQKATVIFADRIMQLGFKEAAKAGISFGMADMVVPKAKETLVEE
TRKRAAEYEKQYADGLITRGEKYNKVVDAWSKCTDKVADAMMEEASKPAKLKDGRLGELN
SVFMMAHSGARGSKNQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDCIITEEDCGTQDGIQMVPVIDGADIVVSLGTRIL
GRTAAVDVVDPGNGKIVAPGGSFLDEDTVVAIEKAGVQAVKVRSVLTCETRTGVCGACYG
RDLARNTQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVAEQSVMESAHDGSIRFV
NRNTVKNAAGELIVMSRGMQAVVVDEEGKERQSFKLSFGARLRVDEKSKIKRGDRISEWD
PYATPILTETAGKAKFEDVVDGISARDEFDEATGISSKVIIDWRSTARGGDLKPAISVFN
AKGVVVKTYALPVGAILSITDGDDVTPGQDLARMPTGGAKTRDITGGLPRVAELFEARRP
KDHAIISESDGRVEFGKDYKNKRRLRVVSEDESLEPFEYMIPKGKHIPVQEGDFVKKGDY
LLDGNPAPQDILSILGVEALANYLVEEIQKVYRLQGVPINDKHIEVIVRQMLQKVEIMES
GDTEFLKGEAVEALDLEDENKRVVELGLTGATAQPMLLGITKASLQTRSFISAASFQETT
RVLTEAASYGKSDTLEGLKENVIVGRLIPAGTGGQLRRYQKLAAERDEQLAIERAEDAAR
LRQPEAAE
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaatgaaccaagacctgatcaacaacacgttcggcaatcagccgccggcgccg
gtgttcgatcagatcaagatctcgatcgcgagccccgagcagatccgctcgtggagcttc
ggcgagatcaagaagcctgagaccatcaactaccgtacgttcaagccggaacgcgacggc
ctcttctgtgcgcgcatctttggtccgatcaaggattacgagtgcctgtgcggcaagtac
aagcggatgaagtacaaggacatcatctgcgaaaagtgcggcgtgcaagtgacgttgcag
cgcgtgcgccgtgagcgcatgggccacatcgagcttgcggcgccggtcgcgcacatctgg
ttcctgaagtcgctgccgagccgcatcgcgctgatgctcgacatggcgctgaaggacatc
gagcgcgtgctgtacttcgaacagtacatcgtgctcgagcctggcctgacgccgctcgaa
gccaagcaattgctgaccgaagaagactatatccgcgcgcaagacgaatacggcgaagac
agcttcaccgcgtcgatcggcgccgaagccgtgcgcgaattgctgatggcgctcaacctc
gaaaaagaggcggagcagctgcgcaaggaaattgctgagtccacttcggaactgaagccg
aagaagctggcgaagcgtctgaagctggtggaagcgttcattcgttcgggcaacaagccg
gaatggatgatcctgacggtcgtgccggtgatcccgccggaactgcgtccgctggtgccg
ctcgatggcggccgcttcgcgacgtcggatctgaacgacctctaccgccgcgtcatcaac
cgcaacaatcgtctgaagcgtctgatggagctccgcgcgccggacatcatcattcgcaac
gaaaagcggatgctgcaggaagctgtcgacgcgctgttcgacaacggccgccgcggccgc
gtcatcacgggcgccaacaaacggcccctaaagtcgctcgccgacatgttgaagggcaag
caaggccgcttccgccagaacttgctcggcaagcgcgtcgactattctggccgttcggtc
atcgtcgtcggtccggatctgaagctgcatcagtgcggcctgccgaagaagatggcgctc
gagctgttcaagccgttcatttacgcgcgcctcgacatcaagggtctgtcgggcaccgtg
aagcaatcgcgccgcatggtggaaaaggagcgtcccgaagtttgggacgtgctcgaagaa
gtcatccgcgagcacccggttctgctgaaccgcgcgccgacgcttcaccgcttgggcatc
caagcgttcgagccgaagctgattgaaggcaaggcgatccagctgcatccgctggtttgc
gccgcgttcaacgctgacttcgacggcgaccaaatggccgtgcacgtcccgctgtcgctc
gaagcgcagctggaagcgcgcgtgctgatgatgagcacgaacaacatcctctcgccggcg
aacggcaaggcgatcatcgtgccgtcgcaggatatcgttctgggtctctattatctgtcg
accgtgaaggatggcgagccgggcgaaggcaaggtgttcggcacgatcggtgaaatcgag
tccgcgctggaagccggcgttgtcacgctgcacagcaagatcaaagcgcgctttgaaacg
gtcgacgccgacaacaagccgctgcgtctgaccatcgacaccacgccgggccggatgaag
cttggggaactgctgccgcgtcacccgaagatcagccacaagctgctcgatcagaccatg
accaagaaggaagtcggcaacctgatcgatcaggtttaccgtttctgcggtcaaaaggcg
acggtgatcttcgccgatcgcatcatgcagctcggcttcaaggaagcggccaaggccggc
atctcgttcggtatggccgacatggttgtgccgaaggcgaaggaaacgctggtcgaagaa
acccgcaagcgcgcggctgagtacgagaagcaatacgcggatggtctcattacgcgtggc
gagaagtacaacaaggttgtcgacgcttggtcgaagtgcaccgacaaagtcgctgacgcg
atgatggaagaagcgtccaagccggccaaactcaaggatggccgcctgggcgaactcaac
tccgtcttcatgatggcgcactcgggcgcacgtggttcgaagaaccagatgaagcagctc
gccggcatgcgcggcctgatggccaagccgtcgggtgaaatcatcgagactccgatcatc
tcgaacttcaaggaaggcctttcggttctcgaatacttcaactcgacccacggcgcccgt
aagggcctcgcggatacggcgctgaagaccgcgaactcgggctatctgacgcgccgcctg
gtcgatgtcgcgcaggattgcatcatcacggaagaagactgcggcacgcaggacggcatc
cagatggtgccggtgatcgacggcgccgacatcgtcgtttcgctcggcacccgcatcctc
ggccgcaccgcggcggtggacgtggttgatccgggcaacggcaagatcgtggcgcccggc
ggctcgttcctcgacgaagatactgtcgtcgcgattgagaaggccggcgtgcaagccgtg
aaggtgcgttcggtgctgacgtgcgaaacccgcacgggcgtctgcggcgcttgctatggc
cgcgacctcgcgcgcaacacgcaggtcaatatcggcgaagcggtcggcgtcatcgcggcg
caatcgatcggtgaacctggcacgcagctcaccatgcgcacgttccacatcggcggcgcg
gcgcaggtcgccgagcaatcggtgatggaatcggcgcacgacggttcgatccgcttcgtg
aaccgcaacaccgtgaagaacgccgctggcgaactcatcgtcatgagccgcggcatgcaa
gccgtggtggtcgacgaagaaggcaaggagcgtcaaagcttcaagctgtcgttcggcgcg
cgtctgcgggttgacgaaaagtcgaagatcaagcgcggcgaccggatttctgaatgggat
ccctacgctacgccgatcctcaccgaaacggccggcaaggcgaaattcgaagacgtcgtc
gatggaatttcggcgcgcgatgagttcgacgaagccaccggcatctcgtcgaaggtgatc
atcgactggcgctcgaccgcgcgcggcggcgatctgaagccagcgatctcggtgtttaac
gccaaaggcgtcgtggtgaaaacctacgcgctcccggtcggcgccattctctcgatcacc
gacggcgatgacgttacgcctggccaagacctcgcacgtatgccgacgggcggcgccaaa
acccgtgacatcaccggcggtctgccgcgcgtggcggaactgttcgaagcccgtcgtccg
aaggatcacgccatcatctcggaaagcgatggccgcgtggagttcggcaaggactacaag
aacaagcgccgtctgcgtgtcgtgtcggaagacgaaagcctcgagccgttcgagtacatg
atcccgaagggcaagcacattccggtgcaagaaggcgacttcgtgaagaagggcgattac
ctgctcgacggcaaccccgcgccgcaggacatcctctccatcttgggcgtcgaagcgctg
gcgaattacctcgttgaggaaattcagaaggtctatcgcctgcaaggcgtgcccatcaac
gacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatcatggaatcc
ggcgacaccgaattcctgaagggcgaagccgtcgaagcgttggatctcgaggacgagaac
aagcgcgtcgtcgaacttggtctgacgggtgcgacggctcagccgatgctgctcggcatc
accaaggcctcgctgcagacgcgttcgttcatctcggccgcgtcgttccaggaaaccacg
cgcgtactcaccgaagccgcttcgtacggcaagtcggacacgctcgagggcttgaaggaa
aacgtgatcgtcgggcgtctgatcccggcgggcacgggcggccaattgcgccgctaccag
aaactcgccgccgagcgcgacgagcaactggcgatcgaacgcgcggaagacgcagctcgc
ctgcgtcagccggaagcggccgagtaa
DBGET
integrated database retrieval system
