KEGG   Thiobacillus sedimenti: VA613_00095
Entry
VA613_00095       CDS       T10461                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K13599  two-component system, NtrC family, nitrogen regulation response regulator NtrX
Organism
tsw  Thiobacillus sedimenti
Pathway
tsw02020  Two-component system
Brite
KEGG Orthology (KO) [BR:tsw00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    VA613_00095
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:tsw02022]
    VA613_00095
Two-component system [BR:tsw02022]
 NtrC family
  NtrY-NtrX (nitrogen regulation)
   VA613_00095
SSDB
Motif
Pfam: Sigma54_activ_2 Response_reg Sigma54_activat HTH_8 dnstrm_HI1420 TrmB BRCA2DBD_OB2 Mga
Other DBs
NCBI-ProteinID: WRS39300
LinkDB
Position
22227..23501
AA seq 424 aa
MSGHILVVDDEVGIRELLSEILTDEGYDVHLAENAEAARAFRAQRRPDLVLLDIWMPDTD
GVTLLKEWAGGGQLTMPVVMMSGHGTIDTAVEATKLGAADFLEKPVALAKLIDTVNKAIK
RGVSLPRRTASMDLSALGRSPLILELKKRLSQIAGNTAPVLLLGEAGSGFEICAHFLHQP
STPWVEIKDRARLVSDPLSFVESLGNGTLYLPEVCELARLEQKGLALLLDRIEGSGARLV
CASSRSLDAMVAAGEFDSRLYYRLSSLAIQVPALREHREDIPDIANFMLAQLIEAGVCPV
RRLTTPALNQLRNFDWPGNLPQLNNVVRTLAVTALASEIDAADVNRVLAPMKQAAPAVAH
GIPLDIPLREARDAFERMYFEHLIQKEGGSMTRVADKSGLERTHLYRKLKQLNIRHGRRL
DDEL
NT seq 1275 nt   +upstreamnt  +downstreamnt
gtgagcgggcatattctcgtcgtggacgacgaagtgggcattcgtgagttgctgtcggaa
atcctcaccgacgaagggtacgacgtgcatctggcggaaaacgccgaggcggcgcgcgcc
ttccgcgcccagcggcgtccggacctggtgctgctcgacatctggatgcccgataccgac
ggcgtgaccctgctcaaggaatgggccggtggcggccagctcaccatgccggtcgtcatg
atgtcgggccacggcaccatcgataccgcggtcgaggcgaccaagctcggcgcggccgat
ttcctggaaaagccggtggcgctggccaagctgatcgacaccgtgaacaaggcgatcaag
cgcggggtctccctgccgcggcgcacggcgagcatggacctgtcggccctcggcaggagc
ccgctgattctcgagctcaagaagcgcctctcgcagatcgccggcaatacggcgccggtc
ctgctgctcggcgaggcgggcagcggcttcgagatctgcgcccacttcctgcaccagccg
tcgacgccctgggtcgagatcaaggaccgggcgcggctggtctccgatccgctgagcttc
gtcgagtcgctcggcaacggcacgctctatctgccggaagtgtgcgagctggcgcgcctg
gagcagaaaggcctggcgctgctgctcgaccgcatcgaagggagcggtgcccgcctggtg
tgcgcgtccagccgcagcctcgacgccatggtcgccgccggcgaattcgacagccgcctc
tattaccgcctgtccagcctcgccatccaggtgcccgcgctgcgcgaacaccgcgaagac
attccggacatcgccaacttcatgctcgcgcagctgatcgaagccggcgtctgccccgtg
cggcggctgacgacgccggccctgaaccagctgcgcaacttcgactggccgggcaacctg
ccgcagctcaacaacgtggtgcgcacgctcgcggtgaccgcgctggcaagcgagatcgac
gccgccgacgtcaatcgcgtgctggcgccgatgaagcaggcggcgccggccgtggcgcac
ggcattccgctcgacattccgctgcgcgaggcgcgcgatgcgttcgagcgcatgtatttc
gagcacctgatccagaaggaaggcggcagcatgacccgggtcgcggacaagtcggggctg
gagcgcacccatctctaccgcaagctcaagcagctcaacatccgccatggtcgccggctc
gacgacgaactgtaa

DBGET integrated database retrieval system