Thiobacillus sedimenti: VA613_00185
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Entry
VA613_00185 CDS
T10461
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
tsw Thiobacillus sedimenti
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsw03400
]
VA613_00185
Enzymes [BR:
tsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VA613_00185
DNA repair and recombination proteins [BR:
tsw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
VA613_00185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
DEAD
Motif
Other DBs
NCBI-ProteinID:
WRS39318
UniProt:
A0ABZ1CMZ4
LinkDB
All DBs
Position
complement(37172..40441)
Genome browser
AA seq
1089 aa
AA seq
DB search
MREPLDTAVALDPGRSAVIEACAGSGKTWLLVSRMLRLLLAGAAPSELLAITFTRKAAQE
MTDRLHQWLRVLALEDETTVRAFLRDRAVPDDEVDALLPRARGLLEAVLTAQPGPTVTTF
HGWFLDLLKRAPLEAGLPWGAPLLERTQQLQDEVRDRLLAQWAAAPGSPEGAALLALLAE
TGEHNLRTLLKRFAAARAEWWAYTAGVSDPVTHALDQLRPLLHAELDHDPVAAFWADELM
VARVRRVGHALEKGSKTEAERGRDIVDTVSRDPASAHPVLLTRLMTAGARRKKQATKELE
KALGDGLAAYLRDLDAVETALETVAAIQVDQRIWTLNRHGLLLGHALVAAYQEAKAQQGV
IDFTDAEWLACRLLQDDAHAPALALKLDARYRHLLLDEFQDTNPLQWQALSTWLLEARGA
ASAMTVFMVGDPKQAIYRFRRGEARVFDAAAAFLHDHFDAPRFATDMTRRLAPDIVKAIN
PVFAGVDGYAEHTHAPDKAGRPGAAFCIPARAASHETEAPAGLRNPLATPQAEAEDRAVH
EEARQFARVLRDEVVDRWGIWDKETQRYRLARPGDVIALVRKRTHLQRYERELEAARIPF
ITSRRGGLLHALEAQDMIALIEVLLLPHADLRLAHVLKSPIFACGDDDLLEVFVPEGGRG
WERLVARADTPGCPPALARAAALLTRWRAHCGRLPAHDLLDRIYFEGDIEARYAAAVPEA
MRPQVAANLRAFMQLALTLDAGRYPTLAAFVRELASLVDDADAAPGEGLAADGENAVRLL
TIHGSKGLEAPIVWLLGGSDHPRGDSYGVLAPWPPDSARPLHLSLFGKRDERGAARETWF
AEETLLAQRESDNLLYVALTRAEQALIVSGDADRNAWLQRVDGAWRTLALPDALPPAAVG
EAVHCAPPRPIAAFPVGERVAAAPASVEAARGELFHACLEHHAPPGAPRDLPALAARLGL
EDALPAIELEARALLAQPHLARFFDPARYRRAHNERVLLDAGGRQQRLDRVVEFDDAVWL
LDYKTGDDSRLLSEPRLAERHRAQLAAYRSLLEALYPGKPVHAALLLADGRLVPLQPTGE
PSPSSLETG
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgagccgctcgacaccgccgtcgcgctcgaccctggccgctcggcggtgatcgag
gcgtgcgccggcagcggcaagacctggctgctggtgtcgcgcatgctgcggctgctgctc
gcgggcgcggcgccctcggaattgctggcgatcaccttcacgcgcaaggcggcgcaggaa
atgaccgaccggctgcaccagtggctgcgcgtgctggcgctggaggacgagacgacggtg
cgcgccttcctgcgcgaccgggctgtcccggacgacgaggtcgacgcattgctgccgcgc
gcccgcggcctgctggaggccgtgctgaccgcgcagcccggaccgacggtcaccaccttc
cacggctggttcctcgacctcctgaagcgcgccccgctggaagccggcctgccatggggt
gcgccgctgctggaacgcacgcagcagctgcaggacgaggtccgcgaccgcctgctcgcg
caatgggcggcggcgcccggatcgccggagggtgccgccctgctggcgctgctggccgag
accggcgagcacaacctgcgcacgctcctgaagcgcttcgccgcagcgcgcgcggagtgg
tgggcctataccgcgggcgtttccgaccccgtcacgcatgcgctcgaccagttgcgcccg
ctgctgcatgccgaactcgaccacgacccggtcgcggccttctgggccgacgaactgatg
gtcgcacgggtgaggcgcgtcggccacgcgctggaaaaaggctcgaagaccgaggccgag
cgcggccgcgacatcgtcgacaccgtctcccgcgacccggcgtcggcgcacccggtgctg
ctgacccgcctgatgaccgccggcgcccggcgaaagaagcaggccacgaaagaactggaa
aaagcgctcggcgacggcctcgccgcctacctgcgcgacctcgacgcggtcgagactgcg
ctcgagacggttgccgccatccaggtcgaccagcgcatctggacgctcaaccgccacggc
ctgctgctcggccatgcgctggtcgccgcctaccaggaagccaaggcgcagcaaggggtg
atcgatttcaccgacgccgaatggctggcgtgccggctgctgcaggacgacgcgcacgcc
cctgcgctcgcgctcaagctcgatgcgcgctaccggcacctgctgctggatgagttccag
gacaccaacccgctgcagtggcaggcgctgtcgacctggctgctggaagcacgcggcgcc
gccagcgcgatgacggtattcatggtcggcgaccccaagcaggcgatctaccgcttccgc
cgcggcgaggcgcgcgtgttcgacgcggccgcggcctttctgcacgatcacttcgacgcg
ccgcgcttcgccaccgacatgacgcgccgcctcgcccccgacatcgtcaaggcgatcaat
ccggtgttcgccggcgtcgacggctacgccgaacacacgcacgcgccggacaaggccggc
cgcccgggcgcggcgttctgcatccccgcgcgtgcggcaagccatgaaaccgaagcgccg
gccggcctgcgcaacccgcttgcgacaccccaggcggaggccgaagaccgcgccgtgcac
gaggaagcccgccagttcgcacgcgtgttgcgcgacgaagtcgtcgaccgctggggcata
tgggacaaggagacccaacgctaccgcctggcacggccgggagacgtgatcgccctggtg
cgcaagcgcacgcatctgcaacgctacgaacgtgagctcgaagccgcgcgcatccccttc
atcacctcgcgtcgcggcggcctgctgcatgcgctcgaggcacaggacatgatcgccctg
atcgaggttctgctgctgccgcacgccgacctcaggctcgcgcatgtgctgaagagcccg
atcttcgcttgcggcgacgacgacctgctggaggtgttcgtgcccgagggcggccgcggc
tgggagcgtctcgtcgcgcgtgccgacacgcccggctgcccgcccgcgctggcacgcgcc
gccgcgctgctgacgcgctggcgcgcgcactgcggcaggctgccggcacacgacctgctc
gaccgcatctatttcgagggcgacatcgaggcacgctacgccgccgccgttcccgaggcg
atgcggccccaggtcgcggccaacctgcgcgccttcatgcagctggcgctgaccctggac
gccggccgctaccccacgctggccgcattcgtccgcgaactcgcctcgctggtcgacgat
gccgacgccgcccccggcgaaggtctggcggcggacggcgagaacgcggtacggctgctg
accatccacggatccaaggggctggaggcgccgatcgtctggctgctcggcggcagcgat
cacccgcggggcgacagctacggggtgctggcgccgtggccgcccgactcggcgcggccg
ctgcacctctcgctattcggcaagcgcgacgagcgcggggccgcgcgcgaaacctggttc
gccgaggagaccctgctggcgcagcgcgaatccgacaacctgctgtacgtcgccctgacg
cgcgccgagcaggcgctcatcgtaagcggcgacgccgacaggaatgcctggctgcagcgc
gtcgacggcgcctggcgcacgctcgccctgcccgacgcgctgccgcccgcggccgtcggg
gaagccgtgcactgcgcgccgccccggcccatcgcggcttttcccgtgggagagcgcgtc
gcggcggccccggcgagcgtcgaggcggcgcgcggcgagctctttcacgcctgtctcgaa
caccacgcgccgccgggcgccccgcgcgacctgccggcgctcgccgcgcggctcgggctg
gaggacgcgctgcccgcgatcgagttggaggcacgcgccttgctcgcacaaccgcatctg
gcgcgcttcttcgacccggcgcggtaccggcgcgcacacaacgaacgggtgctgctcgac
gccggcggccgccagcagcggctcgaccgcgtggtggaattcgacgacgcagtgtggctg
ctcgactacaagaccggggacgacagccggctactgtccgagccccgcctcgccgagcgc
caccgcgcgcagctcgccgcttatcgcagcctgctcgaagcgctttatcccggcaagccg
gtgcacgcggcgctgctgctggccgatggccggctggttccgttgcagcccacgggcgag
ccttctccctcaagcctggagaccgggtga
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