Thiobacillus sedimenti: VA613_00520
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Entry
VA613_00520 CDS
T10461
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw03030
DNA replication
tsw03430
Mismatch repair
tsw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VA613_00520
03430 Mismatch repair
VA613_00520
03440 Homologous recombination
VA613_00520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsw03032
]
VA613_00520
03400 DNA repair and recombination proteins [BR:
tsw03400
]
VA613_00520
Enzymes [BR:
tsw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VA613_00520
DNA replication proteins [BR:
tsw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VA613_00520
DNA repair and recombination proteins [BR:
tsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VA613_00520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WRS39382
UniProt:
A0ABZ1CJE5
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All DBs
Position
complement(110136..110825)
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AA seq
229 aa
AA seq
DB search
MIWRFRPRPALDTTLAARLQEVTARPVREQGLNEDWIVVDVETGGLNPRVDPLLAIGAVR
VTGGAIAVTPACELRLRQHEATTGDNILVHGITTGEQLAGAEPAAALLDWLAFAGGRPRL
AYHAAFDRVALERASMAWLGLKDSAVWLDLALLAPLLLPTGPGFNRPLDDWLAHFGIPVY
QRHGALADAYATAQLWLALLPLAHARGLTQLRQLLRFCRQARWLKSAPV
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
gtgatctggcgtttccgtccccgccccgccctggacacgacactcgcggcgcgcctgcag
gaagtcacggcacgcccggttcgcgagcagggcctgaacgaggactggatcgtggtcgac
gtcgaaaccggcggcctcaatccgcgcgtcgacccgctgctcgccatcggcgcggtcagg
gtgaccggcggcgccatcgccgtgacgcccgcgtgcgagctgcggttgcggcagcacgag
gcgaccaccggcgacaacatcctcgtgcacggcatcaccaccggcgaacagctcgccggc
gccgagcccgccgcagcgctgctcgactggctggcattcgccggcggccgcccacggctc
gcgtaccacgcggcgttcgaccgcgttgcgctggagcgtgcgagcatggcctggctggga
ctgaaggattccgccgtatggctcgacctcgcgctgctcgcgccgctgctgctgcccacc
ggcccgggattcaaccggccgctggacgactggctcgcgcacttcggcatcccggtctac
cagcgccacggtgcgctcgccgacgcctacgccaccgcgcagctatggctggcgctgctg
ccgctggcgcacgcccggggcctgacccagctccggcagctgctgcgtttttgccgtcag
gcccgctggctcaaatccgcccccgtctag
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