Thiobacillus sedimenti: VA613_00725
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Entry
VA613_00725 CDS
T10461
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw00470
D-Amino acid metabolism
tsw00550
Peptidoglycan biosynthesis
tsw01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
VA613_00725 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
VA613_00725 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
tsw01011
]
VA613_00725 (murD)
Enzymes [BR:
tsw01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
VA613_00725 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
tsw01011
]
Precursor biosynthesis
Amino acid ligase
VA613_00725 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MurD-like_N
Mur_ligase_M
Mur_ligase_C
NAD_binding_7
AdoHcyase_NAD
2-Hacid_dh_C
Shikimate_DH
DAO
XdhC_C
DUF6798
Pyr_redox
Pyr_redox_2
Motif
Other DBs
NCBI-ProteinID:
WRS39422
UniProt:
A0ABZ1CJ42
LinkDB
All DBs
Position
152823..154229
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AA seq
468 aa
AA seq
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MNYDSLNLSGKQVLVLGLGDTGLSCARWLAARGARVSVADTRATPPHAARLAELLPQVAL
HTGPFDGARLQAADMLVVSPGIPLADPAVARALAAGVEAVGDVELFARALNALNARREHP
MRVIAITGSNGKSTVTAMCGDMCRMAGLTTCVAGNIGLPVLDALLEIEQGRAPAPQAWVL
ELSSFQLETTRSLNADAATVLNVSEDHMDRYPDMDAYAAAKARIFSGTGVQVLNRDDART
LAMALPGRHVVSFGLDRCPQNENFGLCEDELCLGGDMLMPLSALPVAGLHNAANALAALA
LTRALGLPMEALLRGLVHFKGLPHRVEKVLEIDGVTYYDDSKGTNVGATEAALYGMGSRK
AVVILGGDGKGQDFSPLKAAVQANARAVLLIGRDAPLIESAIAGSGVDSLRVASLDEAVG
QAHRLARPGDAVLLSPACASFDMFRNYAHRAEVFIAAVRRLAAERAGT
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgacagcctgaatctttccggcaagcaggttctggtactcggcctgggcgat
accgggctgtcgtgcgcgcgctggctggcggcgcgcggtgcgcgggtgagcgtcgccgac
acgcgcgcgacgcctccgcatgcggcacggcttgccgaactgctcccgcaggtcgcgctg
cacaccggcccgttcgacggcgcccgcttgcaggcggccgacatgctcgtggtcagcccg
ggcatcccgctcgccgacccggccgtcgcgcgcgcactcgccgcgggggtcgaagccgtc
ggcgacgtcgagctgttcgcgcgtgcgctcaatgcgctcaatgcccggcgggagcatccg
atgcgggtgatcgcgatcaccggcagcaacggcaagagcaccgtcacggcgatgtgcggc
gacatgtgccggatggccggcctgaccacctgcgtcgcgggaaacatcggcctgccggtg
ctcgacgcgctgctggaaatcgagcagggacgtgcgcccgcgccgcaggcctgggtgctc
gagctgtcgagcttccagctcgagacgacgcgcagcctcaatgccgatgcggcgaccgtg
ctgaacgtgtcggaagaccacatggaccgttatcccgacatggacgcctatgccgcggcc
aaggcgcgcatcttcagcgggaccggcgtgcaggtgctcaaccgcgacgacgcgcgcacg
ctggcgatggcgctgccggggcggcacgtggtgagtttcggcctcgaccgttgcccgcag
aacgagaacttcggcctgtgcgaggacgagctgtgcctgggcggcgacatgctgatgccg
ctgtccgccctgccggtcgccggcctgcacaacgccgccaacgccctcgccgcgctcgca
ctgacccgcgcgctggggctgccgatggaggcgctgctgcgcgggctcgtgcacttcaag
ggcttgccgcaccgggtcgagaaggtcctcgagatcgacggtgtcacctactacgacgat
tccaagggcaccaatgtcggtgccacggaggccgcgctctacggcatgggcagccgcaag
gccgtcgtcatcctcggcggcgacggcaagggacaggacttcagtccgctcaaggcggcg
gtgcaggcgaacgcgcgcgccgtgctgctgatcggccgtgatgcgccgctcatcgagtcc
gcgatcgcgggcagcggcgtggacagcctgcgcgttgccagcctcgacgaggccgtcggg
caggcgcaccgcctcgcccggcccggagacgcggtgctgctgtcgccggcctgtgccagc
ttcgacatgttccgcaactacgcgcaccgcgccgaagtcttcatcgcggcggtgcgcagg
ctcgccgcggaaagggcggggacctga
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