Thiobacillus sedimenti: VA613_03810
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Entry
VA613_03810 CDS
T10461
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VA613_03810 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsw03019
]
VA613_03810 (pnp)
03016 Transfer RNA biogenesis [BR:
tsw03016
]
VA613_03810 (pnp)
Enzymes [BR:
tsw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VA613_03810 (pnp)
Messenger RNA biogenesis [BR:
tsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VA613_03810 (pnp)
Transfer RNA biogenesis [BR:
tsw03016
]
Prokaryotic type
tRNA degradation factors
VA613_03810 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
OB_RRP5_4th
S1_RRP5
KH_PNO1_2nd
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
WRS40005
UniProt:
A0ABZ1CKU0
LinkDB
All DBs
Position
complement(783208..785331)
Genome browser
AA seq
707 aa
AA seq
DB search
MSAIKKTFTYGRHQVTLETGEIARQATGAVIVNIDDTVVLVTVVAKNEVKPGQDFFPLTV
DYQEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGFFNEVQVIATVVSSN
PEVDADIPAMLGASAALALSGLPFDGPIGAARVGFINGEYVLNPTSSELKDSALDLVVAG
TETAVLMVESEAMELPEDIMLGAVVFGHTQMQAAINAINELADEAGNDAWDWEPPAEDTA
MVARLKTLAEDGLQQAYNIKQKRARMAAVDEVRSKAFAELITAEMDTVAVNAVKDAFHAL
EAGVVRNRILSGQPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVTTLGTGR
DEQTIDALEGSYSDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALLAVLPSKEE
FGYTMRVVSEITESNGSSSMASVCGGCLSLMDAGVPVKAHVAGIAMGLIKEGNRFAVLTD
ILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITKEIMQAALSQAKEGRMHILGIMKES
VSGSHEMSAYAPRIIAMKINPEKIRDVIGKGGAVIRALTEETGTQIDIQEDGTVKIACTS
MEAGELAKKRIEEITAEVEVGKVYEGPVIKLLDFGAIVNVLPGRDGLLHISQIAHERVNT
IGDYLKEGQVVRVKILEADEKGRLRLSMKALLDAPAATPSETPENAG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgctatcaagaaaacgtttacctacggccgtcatcaggtcaccctggaaacgggc
gagatcgcccgccaggcgaccggcgccgtcatcgtcaacatcgacgacaccgtggtgctg
gtcaccgtcgtcgccaagaacgaggtcaagcccggccaggacttcttcccgctgaccgtc
gactaccaggaaaagacctacgccgcaggccgcatcccgggcggcttcttcaagcgcgaa
ggcaagccctcggaaaaggaaaccctgacctcgcgcctgatcgatcgtccgatccgcccg
ctcttccccgaaggcttcttcaacgaagtgcaggtcatcgccacggtggtgtcgtcgaac
cccgaagtcgacgccgacatccccgccatgctcggcgcctccgccgcgctggcgctgtcg
ggcctgccgttcgacggcccgatcggcgccgcgcgcgtcggcttcatcaacggcgaatac
gtgctcaacccgaccagctccgagctcaaggactccgcgctcgacctcgtcgtcgccggc
accgagaccgccgtgctgatggtcgagtccgaggcgatggaactgcccgaggacatcatg
ctgggcgcggtcgtgttcggccacacccagatgcaggccgcgatcaatgcgatcaacgaa
ctggccgacgaggccggcaacgacgcctgggactgggagccgcccgccgaggacaccgcg
atggtggcacgcctcaagacgctggccgaggacggcctgcagcaggcctacaacatcaag
cagaagcgggcgcgcatggccgccgtcgacgaagtgcgcagcaaggccttcgccgaactg
atcaccgccgagatggacacggtcgccgtcaacgccgtgaaggacgccttccacgcgctc
gaagccggcgtggtgcgcaaccgcatcctttccggccagccgcgcatcgacggccgcgac
acccgtaccgtgcgcccgatcaccatccgcaccggcgtgctgccgcgcacccatggctcc
gccctgttcacccgcggcgagacccaggcgctggtcgtcaccacgctcggcaccggccgc
gacgagcagaccatcgacgcgctcgaaggctcctactccgaccgcttcatgctgcactac
aacatgccgcccttcgccaccggcgaaaccggccgcgtcggctcgccgaagcgccgcgag
atcggccacggccgcctggccaagcgggcgctgctggcggtgctgccgtccaaggaggaa
ttcggctacaccatgcgcgtggtatccgagatcaccgaatccaacggctcctcgtcgatg
gcatcggtgtgcggtggctgcctgtcgctgatggacgccggcgtgccggtcaaggcgcac
gtcgccggcatcgccatgggcctgatcaaggaaggcaaccgcttcgcggtgctgaccgac
atcctcggcgacgaggaccacctcggcgacatggacttcaaggtcgcgggcaccgacaag
ggcgtgaccgcgctgcagatggacatcaagatcaacggcatcaccaaggaaatcatgcag
gctgccctgtcgcaggcgaaggaaggccgcatgcacatcctcggcatcatgaaggaatcg
gtgtccggcagccacgagatgtcggcctatgcgccgcgcatcatcgcgatgaagatcaac
ccggagaagatccgcgacgtcatcggcaagggcggtgccgtcatccgcgcgctgaccgag
gaaaccggcacgcagatcgacatccaggaagacggcacggtgaagatcgcctgcaccagc
atggaagccggcgaactggcgaagaagcgcatcgaggagatcaccgccgaggtcgaagtc
ggcaaggtctacgaaggcccggtgatcaagctgctcgacttcggcgccatcgtcaacgtg
ctgcctggccgcgatggcctgctgcacatctcgcagatcgcccacgagcgcgtcaacacc
atcggcgactacctgaaggaaggtcaggtcgtgcgcgtgaagatcctcgaggccgacgag
aagggccgcctgcgcttgtccatgaaagcgctgctcgacgcgccggccgccactccgagc
gaaacgccggaaaacgcgggctga
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