Thiobacillus sedimenti: VA613_04070
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Entry
VA613_04070 CDS
T10461
Name
(GenBank) 16S rRNA pseudouridine(516) synthase
KO
K06183
16S rRNA pseudouridine516 synthase [EC:
5.4.99.19
]
Organism
tsw Thiobacillus sedimenti
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tsw03009
]
VA613_04070
Enzymes [BR:
tsw01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.19 16S rRNA pseudouridine516 synthase
VA613_04070
Ribosome biogenesis [BR:
tsw03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
VA613_04070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Motif
Other DBs
NCBI-ProteinID:
WRS40051
UniProt:
A0ABZ1CKZ1
LinkDB
All DBs
Position
834989..835711
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AA seq
240 aa
AA seq
DB search
MKLYRILQSQGFGSRKGCMARVRAGAVAVNGAVCDDPEAEIDTTGLELTLDGAVWAYREK
AYLMMHKPAGYECSHHPSHHPGVFSLLPAPLLQRGVQCVGRLDQDTTGLLLFSDDGQFIH
RMIAPRKRIAKVYRARCAEPVTDAMLEALRAGVQLNDEPAPIAALACERLDAITLRLTLA
EGKYHQVKRMIAAAGSRVEALHREAMGAFALPVDLAPGAWRWLEAADLQRLEQAWPSNPY
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgaagctctatcgcatcctgcagtcgcagggcttcggctcgcgcaagggctgcatggca
cgcgtgcgtgcgggggcggtcgcagtcaacggggccgtctgcgacgatcccgaagccgag
atcgataccacgggcctcgagctgacgctcgacggtgccgtctgggcctatcgcgagaag
gcctatctcatgatgcacaagccggccggctacgagtgctcgcatcacccgagccaccat
cccggcgtcttcagcctgttgcctgcgccgctgctgcagcgcggcgtgcagtgcgtcggg
cggctcgaccaggacaccaccgggctgctgctgttttccgacgacggccagttcatccat
cgcatgatcgcgcccagaaaacgcatcgccaaggtctatcgtgcacgctgcgccgagccg
gtgaccgatgccatgctcgaggcgcttcgcgccggcgtccagctcaatgacgagccggcg
ccgatcgcggcgctggcgtgcgaaaggctggatgcgatcaccctgcgcctcacgctcgcc
gagggaaaataccaccaggtcaagcgcatgattgccgcggccggcagccgggtggaggcg
ctccatcgcgaagcgatgggcgccttcgcactgcccgtcgacctggctcccggcgcctgg
cgctggctggaggcggcggacctgcaacgactggagcaagcatggccatccaacccgtac
tga
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