Thiobacillus sedimenti: VA613_04640
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Entry
VA613_04640 CDS
T10461
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VA613_04640 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsw03019
]
VA613_04640 (recQ)
03400 DNA repair and recombination proteins [BR:
tsw03400
]
VA613_04640 (recQ)
Enzymes [BR:
tsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VA613_04640 (recQ)
Messenger RNA biogenesis [BR:
tsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VA613_04640 (recQ)
DNA repair and recombination proteins [BR:
tsw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VA613_04640 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
WRS40161
LinkDB
All DBs
Position
952379..954175
Genome browser
AA seq
598 aa
AA seq
DB search
MSDTPLKLLNRVFGYPAFRGQQQAIIEQVAGGGDALVLMPTGGGKSLCYQIPALLREGCA
VVVSPLIALMHDQVAALQELGIAAAYLNSSLDGAAAMQVEREFVTGQLKLLYVAPERLLT
PRFQSLLEQARLALFAIDEAHCVSQWGHDFRPEYLGLSALHERFPEVPRIALTATADAAT
RAEIVERLDLHEAQVFAASFDRPNIRYRISEKSDPRRQLLAFLDEHAGEAGIVYCSTRKK
VEETAEALVQAGYTALAYHGGMDNDTRRRHQERFLREDGVIMVATLAFGMGIDKPDVRFV
AHLDLPRSVEGYYQETGRAGRDGEPAEAWMAWGLQDVVTQRRFIDEGEAEDTHKRIGHAK
LDALVGLCEAASCRRVALLSYFGEASQPCGNCDVCLNPPTLWDGTEAAQKLLSTVYRTGQ
RFGAGHVIDVLLGKTTEKIDRFGHNQLSVFGIGASQSDKVWRAVLRQLVVRGLLEVDHTA
YGALKLTQAAKPVLKGEETVMLRAIEARPARKKSRLAPSSGAGVHDDEDPLFLSLRAWRR
ETANEKGVPAYVILHDATLREIAARRPATLAELGEIPGLGAKKLEAYGEDVLGVVAEG
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacgcccctaaaactgctgaatcgcgtcttcggctaccccgccttccgcggc
cagcagcaggccatcatcgagcaggtcgcgggcggcggcgacgcgctggtgctgatgccg
accggcggcggcaagtcgctgtgctaccagatcccggcgctcttgcgcgaggggtgcgcg
gtcgtggtgtcgccgctgatcgcgctgatgcacgaccaggtcgcggcgctgcaggaactc
ggcatcgccgcggcctacctgaattccagcctcgacggcgctgccgcgatgcaggtcgag
cgcgagttcgtgaccggccagctgaagctgctgtacgtggcgccggaacgcttgctgacg
ccgcgcttccagagcctgctggagcaggcgcggctcgcgctctttgcaattgacgaggcg
cactgcgtctcgcagtgggggcacgatttccgtcccgagtatctcggcctgtcagcgctg
cacgagcgcttccccgaagtgccgcgcatcgcgctcacggccactgccgacgccgccacg
cgcgccgagatcgtcgaacggctcgacctgcacgaagcgcaagtctttgccgccagcttc
gaccgccccaacatccgctaccgcatcagcgagaaatccgacccgcgccgccagctgctc
gccttcctcgacgaacacgccggcgaggccggcatcgtctactgcagcacgcgcaagaaa
gtggaagaaaccgccgaggcgctcgtccaggccggctacaccgcgctggcgtatcacggc
ggcatggacaacgacacgcgccgccgccaccaggagcggttcctgcgcgaggacggcgtc
atcatggtcgccacgctcgcgttcggcatgggcatcgacaagcccgatgtgcgcttcgtc
gcccacctcgacctgccgcgctcggtcgagggctactaccaggaaaccggccgcgccggc
cgcgacggcgagcccgccgaggcgtggatggcgtggggcctgcaggacgtcgtgacgcaa
agacgttttatcgacgagggcgaggccgaggacacgcacaagcgcatcggccacgccaag
ctcgacgccctggtcggcctgtgcgaagccgccagctgccgccgcgtcgcgctcttgagc
tacttcggcgaagccagccagccctgcggcaactgcgacgtctgcctcaacccgcccacg
ctgtgggacggcaccgaggccgcgcagaagctgttgagcacggtctaccgcaccggccag
cgcttcggcgccggccacgtcatcgacgtgctgctcggcaagaccaccgagaaaatcgac
cgcttcggccacaaccagctgagcgtgttcggcatcggcgccagccagagcgacaaggtc
tggcgtgccgtgctgcgccagctcgtggtgcgcggcctgctggaggtcgatcacaccgcc
tacggcgcactcaagctcacccaggccgccaagcccgtgctgaagggcgaggaaaccgtc
atgctgcgcgccatcgaagcgcggccggcgcgcaagaaatcgcgcctcgcccccagctcc
ggcgccggcgtccacgacgacgaagatcccttgttcctgtccctgcgcgcctggcgccgc
gaaaccgccaacgaaaagggcgtgcctgcctacgtcatcctgcacgacgccaccctgcgc
gagatcgctgcgcgccgtcctgccacgctggcggagctgggcgaaattcccgggctgggt
gcgaagaaactggaggcctacggcgaggacgtgctgggggtggtggcggaggggtga
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