Thiobacillus sedimenti: VA613_04880
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Entry
VA613_04880 CDS
T10461
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw00541
Biosynthesis of various nucleotide sugars
tsw01100
Metabolic pathways
tsw01250
Biosynthesis of nucleotide sugars
Module
tsw_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
VA613_04880 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
tsw01005
]
VA613_04880 (rfaD)
Enzymes [BR:
tsw01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
VA613_04880 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
tsw01005
]
Core region
VA613_04880 (rfaD)
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
KR
Motif
Other DBs
NCBI-ProteinID:
WRS40204
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All DBs
Position
1001918..1002916
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AA seq
332 aa
AA seq
DB search
MSQYTVVTGAAGFIGSNIVKALNERGETNIIAVDNLTRADKFRNLTDCEIADYLDKAEFL
DFVEQGVLDGSVAAIFHEGACSDTMETDGRYMMENNYRYSGALLKFCQDEGAQFLYASSA
SVYGAGRVFSESREFESPLNVYGYSKFLFDQSVRRLWADRTAQIVGFRYFNVYGPREQHK
GRMASVAFHFFNQYRAEGRVKLFEGCDGYPNGEQRRDFVSIEDVVRVNLWFLDHPESSGI
FNVGTGRCQSFNDVAVAAVNACRAADGQPALSLAELQAQGIVSYIAFPDALKGKYQSYTE
ADISALRGAGYDAPFYSVEEGTARYIEHLLKK
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgagccagtacaccgtcgttaccggcgccgccggattcatcggatcgaacatcgtcaag
gcgctgaacgaacgcggcgagaccaacatcatcgccgtcgacaacctgacccgcgcggac
aagttcaggaacctgaccgactgcgagatcgccgactacctcgacaaggccgaattcctc
gacttcgtcgagcagggcgtgctcgacggcagcgtggcggcgatcttccacgagggggca
tgctccgacaccatggagaccgacggccgttacatgatggagaacaactaccgctactcc
ggcgcgctgctgaagttctgccaggacgagggtgcgcagttcctctacgcctcgtcggcg
agcgtctacggggccgggcgcgtgttctccgaatcgcgcgagttcgagtcgccgctcaac
gtctacggctactccaagttcctgttcgaccagagcgtgcgccgcctgtgggccgaccgc
accgcgcagatcgtcggcttccgctacttcaacgtctacggcccgcgcgaacagcacaag
gggcgcatggcctcggtcgccttccactttttcaaccagtaccgcgccgaaggccgcgtg
aagctgttcgaaggctgcgacggctacccgaatggcgagcagcgccgcgacttcgtctcg
atcgaggacgtggtgcgcgtcaatttgtggttcctcgaccatcccgagtcctcgggcatc
ttcaacgtcggcaccggccgctgccagagcttcaacgacgtggcggtggcggcggtcaac
gcctgccgcgccgccgatggccagccggcgctcagcctggccgagttgcaggcgcagggc
atcgtcagctatatcgcctttcccgatgccttgaagggcaagtaccagagctatacggaa
gcggacatttcggcactgcgcggcgcggggtatgatgcgccgttctacagcgtcgaagaa
ggcaccgcgcgctacatcgaacacctgctgaagaaatga
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