Thiobacillus sedimenti: VA613_05430
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Entry
VA613_05430 CDS
T10461
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw03018
RNA degradation
Brite
Enzymes [BR:
tsw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VA613_05430
Messenger RNA biogenesis [BR:
tsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VA613_05430
Ribosome biogenesis [BR:
tsw03009
]
Prokaryotic type
rRNA processing factors
VA613_05430
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WRS40311
LinkDB
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Position
complement(1113569..1116148)
Genome browser
AA seq
859 aa
AA seq
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MKRMLFNATQAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDY
GCERHGFLPFKEISRACLPNGGRVPENLKEGQELLVQVEKDERGNKGAALTTYVSLAGRY
VVLMPTNPRGGGVSRRIEGEERNELRDTLAQLDIPEGMSLIARTAGIGRSAEEFQWDLNY
LLSLWKAIDGAAQSMSGSFLIYQEGSLVIRAIRDYFSADIGEILIDTEDIYEQAQQFMAH
VMPTNVNKVKLYRDDVPLFSRFQIEHQIESAFSRQVNLPSGGAIVIDHTEALVSVDVNSA
RATKGSDVEQTAFNTNLEAADEIARQMRLRDLGGLIVIDFIDMENPKHQREVENRLRDAL
HHDRARVQTGKISRFGLLEMSRQRLQPSLGETSYNPCPRCHGTGHIRGTESSALHILRIL
QEEAMKENTGAVHVQLPVDVATFLLNEKRVDIHAVESRLKVNVVLIPNIHMETPHYTITR
LRHDELNVREAAEPSYKMVAVPETEAVYQTAAAAAPARQEAAVKSIAPPQPIPAPRPAVP
AEPQVLPQVQPQGGLFERIFGWFRKRGEEAPAAEAAPAPEPVAIITRTERPAERRERKPG
QRRGRGEGREGRGGEARPQEGRPAEAREARAEQPKAPRPPRQPKPPRPEAEAAPRVAEAP
ETPREPAAEEKREGRNRRGRGRRGRGEGRPEAAAPHTIIEIAGYRAIVEVAHPPKAKPVA
VEPAAAEAAAPAQQALALEAAPPAASVPAAVTASPAEVLADLAAGAADLQQVETQAAPAV
AAEGGERSSRPRRRRRPAAKAEAEPVGLMQVETTAPAAAPAAETPAAAPHPTRRRPRPQL
AEVQEPLVQVETRSNPPSN
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgcttttcaacgcaacccaggcggaagaactccgggttgccatcgtcgac
gggcagaagctcgtcgaccttgacatcgagtccgccagcaaggaacaacgcaagggcaac
atctacaagggtgtcgtcacccgcgtcgagcccagcctcgaggccgcgttcgtcgactac
ggctgcgagcgccacggcttcctgccgttcaaggaaatctcgcgcgcctgcctgcccaac
ggcggccgcgtcccggaaaacctcaaggaaggccaggaactcctggtccaggtggaaaag
gacgagcgcggcaacaagggcgcggcgctcaccacctacgtctcgctcgccggccgctac
gtcgtgctgatgccgaccaacccgcgcggcggcggcgtatcgcgccgcatcgagggcgag
gagcgcaacgaactgcgcgacaccctggcgcagctcgacatccccgaaggcatgagcctg
atcgcccgcaccgccggcatcggccgctcggccgaggagttccagtgggacctcaactac
ctgctgagcctgtggaaggcgatcgacggcgccgcgcagtcgatgtccggctccttcctc
atctaccaggaaggcagcctggtgatccgcgcgatccgcgactacttctcggccgacatc
ggcgagatcctgatcgacaccgaggacatctacgagcaggcgcagcagttcatggcgcac
gtgatgccgaccaacgtcaacaaggtcaagctctaccgcgacgacgtgccgctgttctcg
cgcttccagatcgagcaccagatcgagtcggcgttctcgcgccaggtcaacctgccctcg
ggcggcgcgatcgtcatcgaccacaccgaggcgctggtctcggtcgacgtcaactcggcg
cgcgccaccaagggcagcgacgtcgagcagaccgcattcaacaccaacctcgaggcggcc
gacgagattgcccgccagatgcgcctgcgcgacctcggcggcctcatcgtgatcgacttc
atcgacatggagaaccccaagcatcagcgcgaggtcgagaaccgcctgcgcgatgccctg
catcacgaccgcgcccgcgtgcagaccggcaagatctcgcgcttcggcctgctggaaatg
tcgcgccagcgcctgcagccctcgctcggcgagaccagctacaacccctgcccgcgctgc
cacggcaccggccacatccgcggcaccgaatcctccgcgctgcacatcctgcgcatcctg
caggaagaggcgatgaaggagaacaccggcgcggtgcacgtgcagctgccggtcgacgtc
gcgaccttcctgctgaacgagaagcgcgtcgacatccacgccgtcgaatcgcggctcaag
gtcaacgtggtgctgatccccaacatccacatggagacaccgcactacacgatcacccgt
ttgcgccacgacgagttgaacgtgcgcgaagcggccgagccgagctacaagatggtcgcg
gttccggagaccgaggccgtctaccagaccgccgcagccgccgcgccggcccgccaggaa
gccgccgtcaagtcgattgcgccgccgcagccgattccggcgccgcgccccgccgtaccc
gccgaaccccaggtcctgccgcaggtccagcctcagggcgggctgttcgagcgcatcttc
ggctggttccggaagcgcggcgaggaagcgcccgccgccgaggcggcgccggctcccgaa
ccggtcgcgatcatcacccgcaccgaacgtccggccgaacggcgcgagcgcaagcccggc
cagcgccgcggccgcggcgagggccgtgaaggccgcggcggcgaagcgcgtccgcaggaa
ggccgtccggccgaagcgcgcgaggcgcgcgccgagcagcccaaggcaccgcgcccgccg
aggcagcccaagccgccgcgtcccgaggccgaggccgcaccccgcgtcgccgaagcaccc
gaaacgccgcgcgagccggccgccgaggagaagcgcgaaggtcgcaatcgtcgcggacgc
ggacgccgcggtcgcggcgagggccgcccggaagcggccgccccgcacacgatcatcgaa
atcgccggctatcgcgcgatcgtcgaagtcgcgcatcccccgaaggccaagccggtcgcg
gtcgagcccgcggcggcggaagcggccgcgccggcgcagcaggcgcttgcgctggaagcc
gctccgccggcggcatccgttcccgccgcggtgaccgcgtcgcctgccgaggtgctggcc
gacctcgccgccggcgccgccgacctgcagcaggtcgaaacgcaggcggccccggccgtc
gcagcggagggcggcgagcggtcctcccgcccgcgccggcgccgccgtcctgcggccaaa
gccgaggccgaaccggtcggcctgatgcaggtggaaacgacggcaccggcggccgcgccc
gccgccgagacccccgccgccgcgccccaccccacccgccggcggccgcgcccgcagctc
gccgaggtgcaggaaccgctggtgcaggtcgaaacccggtcgaatccgccgtcgaattga
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