Thiobacillus sedimenti: VA613_05755
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Entry
VA613_05755 CDS
T10461
Symbol
kdsB
Name
(GenBank) 3-deoxy-manno-octulosonate cytidylyltransferase
KO
K00979
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:
2.7.7.38
]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw00541
Biosynthesis of various nucleotide sugars
tsw01100
Metabolic pathways
tsw01250
Biosynthesis of nucleotide sugars
Module
tsw_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
VA613_05755 (kdsB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
tsw01005
]
VA613_05755 (kdsB)
Enzymes [BR:
tsw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.38 3-deoxy-manno-octulosonate cytidylyltransferase
VA613_05755 (kdsB)
Lipopolysaccharide biosynthesis proteins [BR:
tsw01005
]
Lipid A
VA613_05755 (kdsB)
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Gene cluster
GFIT
Motif
Pfam:
CTP_transf_3
NTP_transf_3
DUF2064
DacZ_P
Motif
Other DBs
NCBI-ProteinID:
WRS40375
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Position
1168039..1168797
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AA seq
252 aa
AA seq
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MRFRVVIPARYASSRLPGKPLADIGGRPMVLHVLERALEAGADSVVVATDDARVQQAVEA
AGHQALMTSPEHQSGTERLVEVAETLGWPDDALVVNVQGDEPLIDPALIREAARQLVVHD
DAVMATLAHPIHDHADFVNPNVVKVVADEAGYALYFSRAPIPWPRDAFGANQPMPRELGA
LRHIGLYAYRAGFLRTYASLPGSPLERHEMLEQLRVLWHGYRISLGITPGAPAPGVDTAE
DLERVRGLFKAA
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttccgtgtcgtgattccggcgcgctatgcgtcgagtcgcctgccgggcaagccg
ctcgcggacatcggcggcaggcccatggtgctgcacgtgctcgagcgcgcgctcgaggcg
ggcgccgactcggtcgtggtcgcgaccgacgacgcgcgcgtgcagcaggccgtcgaggcc
gccggccaccaggcgttgatgacctcgcccgaacatcagtcgggcaccgagcggctcgtc
gaggtcgccgagacgctcggctggccggacgacgccctcgtcgtcaacgtgcagggcgac
gagccgctgatcgaccctgcgctgatccgcgaggccgcgcgccagctggtggtgcacgac
gacgcggtgatggcgacgctggcacatccgatccacgaccatgcggacttcgtcaatccc
aatgtcgtcaaggtcgtcgccgacgaggccggctacgcgctgtatttcagccgcgcgccc
attccgtggccgcgcgacgcgttcggcgcgaaccagccgatgccgcgcgagctcggcgcg
ctgcgccacatcgggctgtatgcctaccgcgcgggtttcctgcgtacctatgcgagcctg
cccggttcgccgctcgagcgccacgaaatgctggagcagttgcgcgtactgtggcacggc
tatcgcatcagcctcggcatcacgcccggcgcgccggctccgggggtcgatacggcggag
gatctcgagcgcgtccgcggtctctttaaagctgcatag
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