Thiobacillus sedimenti: VA613_09020
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Entry
VA613_09020 CDS
T10461
Name
(GenBank) strawberry notch family protein
KO
K26273
protein strawberry notch
Organism
tsw Thiobacillus sedimenti
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsw03036
]
VA613_09020
Chromosome and associated proteins [BR:
tsw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
VA613_09020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
HisG
MTS
Motif
Other DBs
NCBI-ProteinID:
WRS38155
LinkDB
All DBs
Position
1831001..1835266
Genome browser
AA seq
1421 aa
AA seq
DB search
MPRLAEAARLLLPHLEQGHRVDAAVLRAAMEQAFGASDTSGAWDWKTAYDACEAATVLFL
RKYGKPLFRKAGSMAATLPQLAKVASLLPTHTRRSEESQALQQFSTPIPLGLAALCASAI
APGDRVLEPSAGTGLLAILAETAGGALVLNELAETQADLLAHLFPDLYVTRFDAAQIDDH
LDRAITPTVVLMNPPFSAMANVSGRMADAAYRHVASALARLADGGRLVAITGANFGPETP
SWRDAFARLQERGTVVFTAAIDGSVYAKHGTTVETRVTVIDKAPASDPAQFPASAGIAPD
VATLVGWIAEHVPPRRPVAGLLAAPGAGNVATPRTVRGYLARAASRQQATAIAEPEGVEL
SYETVEWTPPEGVRLTDALYEEYGLQSIRIPGSLGHPTKLVQSAAMASVAPPKPSYRPHL
PTAIVSDGLLSDAQLESIIYAGEAHTDFLAGAWSVDETFDLVTAARDDAESAVRFRRGWF
LGDGTGAGKGRQVAGILLDNWLKGRRRALWISKSDKLIEDAQRDWSALGMERLLVTPLSR
FRQGTPIRLAEGILFTTYATLRTDERGEKLSRVRQIVEWLGSDFDGVIIFDESHAMQNAV
GGKGERGDQAPSQQGRAGLRLQHALPNARIVYVSATGATTVHNLAYAQRLGLCGGEDFPF
ATRAEFVEAIEDGGVAAMEVLARDLKALGLYAARSLSYEGVEYELVEHRLTPEQIRIYDA
YAGAFSIIHNNLDAAMQAANITGETGTLNAQAKAAARSAFESAKQRFFGHLLTSMKTPSL
IGAIERDLDAGHAAVIQIVSTGEALMERRLAEIPTEDWGDVQVDITPREYVLDYLAHSFP
VQLYEPFTDSEGNLSSRPVYRDGQPVESREAVARRDRLIEKLASLPPVPGALDQIVQRFG
TDIVAEVTGRSRRVIRKGDRLMVENRAASANLAETAAFMDDTKRILVFSDAGGTGRSYHA
ELSARNRRLRVHYLLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIA
RRLDTLGAITRGQRQTGGQGLFRPEDNLESHYGRDALRQLYMLLVRGKVEGCSLQTFEAS
TGLKLMDANGIKDELPPITTFLNRMLALTIDLQNVLFTAFEQLLTARIEGAIASGTYDAG
LETLRAESFVVADRSVIYSHPATGAETRLLTITERRRNQPVTLDEALDRLSDPRAALLVN
ERSGRAAVQVPAPSLMLDDGEIERRVRLVRPMEHHSLPLKVMAESHWAEADRKSFASAWQ
TELGEVPEFTDSTIHVVAGLLLPIWKRLPNESTRVYRLQTDAGERIIGRKVSPAWVATAL
AAGAPTLTPDTAFAALMDGRTVLDLAEGLQLRRVRVMGANRIELSGFNDTMRDRLKAYGL
FHEIISWKLRMFVPTDASGIAILAKVLDRYPVERVGEREAA
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
gtgccacgccttgccgaggccgcgcggcttcttctcccccatctcgagcagggacaccgc
gtcgacgccgccgtcctgcgcgccgcgatggagcaggccttcggcgcttccgacacgtcc
ggcgcgtgggactggaagaccgcctatgacgcctgcgaggcggcgacggtcctgtttctc
cgcaaatacggcaagccgcttttccgcaaggccggctccatggctgcgacgctgcctcag
ctcgcgaaggtcgcgagccttcttcccacccatacacggcggtccgaggagagccaggcg
cttcagcaattctcgacgccgatcccgctcggcctcgccgcgctatgcgcctctgccata
gcgcccggcgaccgcgtgctggagccgtcagccggcaccggcctcctggccattctcgcg
gagaccgccggcggcgcgctcgtccttaacgagctggccgagacccaggccgatctgctc
gcccacctctttcccgatctttacgtgacgcgcttcgacgcggcgcagatcgacgatcac
ctcgatcgcgcgatcacgccgaccgtggtgttgatgaacccaccgttctcggcgatggcg
aacgtgagcggcaggatggccgatgccgcctatcgccatgtcgcttcggcgctggcgcgt
ctcgccgacggcggcaggcttgtcgcgatcaccggcgcgaacttcggccccgagacgcca
tcctggcgcgatgccttcgcccgcctgcaggagcgcggcaccgtcgtcttcaccgcggcg
atcgacggatcggtctatgccaagcacggcacgaccgtcgagacgcgcgttaccgtgatc
gataaggcgcccgcgtccgatccggcgcagtttcccgcgtccgccgggatcgcgccggac
gtcgccacgctggtcggctggatcgccgaacatgtcccgccgcgtcgcccagtcgccgga
ctgctcgctgcgccgggcgccggcaatgtcgccacgcctcgaaccgttcgcggctatctc
gcgcgcgctgcctcgcggcagcaggcaacagcgattgccgagcccgagggcgtcgagttg
tcttatgagaccgtcgaatggacaccgcccgagggcgtccgtctcacggacgcgctttat
gaagaatacggattgcagtcgatccgtattcctggctctctggggcatccgaccaagctc
gtgcagtcggcggcgatggcgtcggtcgcgccgcccaagccctcctatcgtccgcatctc
cccacagctattgtcagcgacggcctgctgtccgacgcgcagcttgaaagcatcatctat
gccggcgaagcgcatacggactttctggcgggcgcatggagtgtcgatgagaccttcgat
ctcgtcaccgccgcgcgcgacgacgctgagagcgccgtacgcttccgtcgcggctggttt
ctcggcgacggcaccggcgcgggcaagggccgccaggtcgccggcatcctgctcgacaac
tggctgaagggccgccgtcgcgccttgtggatcagcaagtccgacaagctgatcgaggac
gcgcagcgcgactggtcggccctcggcatggagcgactgctggttacgccgctctcgcgc
ttccgccaaggcacgccgatccgcctcgcggaaggcatcctatttacgacctatgccacg
ctgcgcaccgatgagcgcggcgagaagctttcgcgcgtccggcagatcgtcgaatggttg
ggctccgacttcgatggagtgatcattttcgacgagagccatgcgatgcagaacgccgtc
ggtggcaagggcgagcgtggcgaccaggcgccgtcgcaacagggacgcgcaggcttgcgt
cttcagcacgccctgccgaacgcccgcatcgtctatgtctcggcgacgggcgccacgacc
gtccacaacctcgcttacgcccagcgcctcgggctgtgcggcggcgaggactttccgttc
gccacgcgcgccgaattcgtcgaggcgatcgaggatggcggcgtcgcggcgatggaagtg
ctggcgcgcgacctcaaggcgctcggcctctatgcagcgcgttcgctgtcctacgagggt
gtcgagtacgaactggtcgaacaccggctcacgcccgaacagatccgcatctacgacgcc
tatgcgggcgcgttctcgatcatccataacaatctcgacgccgcaatgcaggcggccaac
atcaccggcgagacgggcacgctgaacgcccaggccaaggccgccgcgcgctcggccttc
gagagcgccaagcagcgcttcttcggccatctgctcacgtcgatgaagacgccgtcgctc
atcggcgcgatcgagcgcgatctcgacgccggccacgccgccgtcatccagatcgtctcg
acgggcgaagccttgatggagcgccggctcgcggaaatcccaaccgaggactggggcgac
gtccaggtcgatatcacgccgcgcgagtacgtgctcgattacctcgcccattcctttccg
gtgcagctctacgagccgttcaccgactcggaaggcaatctctcgtcgcggccggtctat
cgcgacggccagccggtcgagagccgcgaagccgtcgcgcgtcgtgaccgcctgatcgag
aagctcgcctcgcttccgcccgtgcccggcgcgctcgaccagatcgtccagcgcttcggc
accgacatcgtcgccgaagtcaccggccgatcgcgccgcgtgatccgcaagggcgaccgc
ctgatggtcgagaaccgtgcggcgtcggcaaacctagccgagaccgccgctttcatggat
gacaccaagcgcatcctcgtcttcagcgacgccggcggcaccggacggagctatcacgcc
gagctgtcggcgcggaatcgcaggctgcgtgttcattatctccttgagcccggatggaag
gcggacgccgccatccagggcctgggccgcacgaaccgcaccaaccaggcgcagccgccg
ctgttccggccgattgcgaccgacgtgaaggcggagaagcgctttctctccaccatcgcg
cgccgcctcgacacgctgggcgccatcacgcgcggccagcgccaaaccggcggccagggg
ttattcagacccgaggataatctcgaaagccactacggccgcgatgcactccgccagctc
tacatgttgctggtgcgcggcaaggtcgaaggctgctcgcttcagaccttcgaggcgtcg
accggactgaagctgatggatgccaacggtatcaaggacgagctgccgccgatcacgacc
ttcctcaacagaatgctggcgctgactatcgacttgcagaacgtgctcttcaccgcgttc
gagcaattgctcaccgcccgcatcgagggcgcgatcgcatccggcacttacgacgccgga
ctggagacgttgcgcgccgagagcttcgtcgtcgccgaccgaagcgtcatctatagccat
ccggccacgggcgcggagacccggctgctcaccatcaccgaacgccgccgcaaccagccc
gtgacgctggacgaggcgctcgatcgtctctccgatccgcgcgcggccctgctcgtcaat
gagcggtcgggcagagccgccgttcaagtcccggcgccgagcctcatgctcgacgacggc
gagatcgaacgccgcgtccgtctggtccggccgatggaacatcacagtcttccgctgaag
gtgatggcggaaagccattgggccgaagccgatcgtaagagcttcgcctcggcctggcag
accgaactcggcgaagtgcccgaattcaccgacagcaccatccatgtcgttgcgggcttg
ctcctgccgatctggaagcggctgccgaacgagtcgacgcgcgtctatcggcttcagacc
gatgccggcgagcgcatcatcggccgcaaggtctcgcccgcctgggtcgcgaccgccctc
gcagccggcgctccgacattgacgcctgacaccgccttcgccgccctcatggacggccgg
accgtcctcgatctcgccgaaggcctccagctccgtcgcgtgcgggtcatgggcgccaac
cgcattgaactgtcgggcttcaacgacacgatgcgcgaccggctgaaagcctacggcctc
ttccacgagatcatctcctggaaactgcgcatgttcgttccgaccgacgcgagcgggatc
gcgatactggcgaaggtgctcgaccgctatccggtcgagcgcgtcggcgagcgcgaggcc
gcgtga
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