Thiobacillus sedimenti: VA613_09880
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Entry
VA613_09880 CDS
T10461
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw03410
Base excision repair
tsw03430
Mismatch repair
tsw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VA613_09880 (recJ)
03430 Mismatch repair
VA613_09880 (recJ)
03440 Homologous recombination
VA613_09880 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsw03400
]
VA613_09880 (recJ)
DNA repair and recombination proteins [BR:
tsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VA613_09880 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VA613_09880 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VA613_09880 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
WRS38314
LinkDB
All DBs
Position
2001090..2002790
Genome browser
AA seq
566 aa
AA seq
DB search
MPSIVTRPCPADARSALEAAGLAPAWARLYAARGVSHPDEVAHRLPQLLPPAGLLHGERA
AALLADAIRDRKRLLIVADYDADGATACAVGVRGLRMLGARVDYLVPNRLEHGYGLSPAI
VELAAARQPDLLVTVDNGIAAVAGVAAANARGIPVLVTDHHLPGDALPDAACIVNPNQPG
CSFGSKNLAGVGVMFYVLLALRAELRRRGAYADRPEPDLRALLDLVALGTVADVVKLDAN
NRTLVAQGLARMRAGKACAGVNALFRAAGRDPARATVFDLGFMLGPRLNAAGRIDDMALG
IECLLADDPASAQRLAQELDALNRARRDVEGDMLEEALAILANFDPSDSHSLTAFQPDWH
AGVIGILASRLKDKFHRPTIVFAQSDSGELKGSGRSIPGLHLRDALDLVDKRHPGLILKF
GGHAMAAGLSIAGGRHDDFSRAFEAVVRELIDPADLEGMIETDGELALEEHCYELAEQLD
HAVWGQGFPAPLFTATFDVVAQRIVGEKHLKLRLEREGASFEAMRFFHPDPLPERIRAVY
ALMPNEFNGQRALQLKLQHWEPAERA
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgatcgtcacccgcccctgccccgccgatgcccgttccgcgctcgaggccgcc
ggcctcgcgccggcctgggcacggctgtatgccgcgcgcggcgtcagccaccccgacgaa
gtcgcccaccgcctgccgcagctgttgccacctgccggcctgctgcacggcgagcgcgct
gcggccctgctcgccgatgccatccgcgaccgcaagcgcctcctgatcgtcgccgactac
gacgccgatggggcgacggcgtgcgcggtcggcgtgcgcggcctgcgcatgctcggcgcc
cgcgtcgattatctggtgcccaaccggctcgaacacggctacggcctgagcccggcgatc
gtcgagctcgcggccgcacggcagcccgacctgctggtgaccgtcgacaacggcatcgcg
gccgtcgcgggcgtggctgcggcgaatgcgcgcggcatcccggtgctcgtcaccgatcat
cacctgcccggcgacgccctgccggacgccgcctgcatcgtcaatcccaaccagccgggg
tgcagcttcggctcgaaaaatctggccggcgtcggcgtgatgttctacgtgctgctcgcg
ctgcgtgcggaactgcgccggcgcggcgcctacgccgatcgtcccgaacccgacctgcgc
gcgctgcttgatctggtggcgctcggcaccgtcgccgacgtcgtcaagctcgacgccaac
aaccgcaccctcgtcgcccagggcctcgcgcgcatgcgcgccggcaaggcctgcgccggc
gtcaatgcactgttccgcgccgctggtcgcgaccccgcccgcgcgacagtgttcgatctc
ggcttcatgctcggaccgcggctcaacgccgccgggcgcatcgacgacatggcgctcggg
atcgaatgcctgctggccgacgacccggcctccgcgcaacggctcgcgcaggaactcgat
gcgctcaaccgcgcgcggcgcgacgtcgagggcgacatgctggaggaggcgctcgccatc
ctcgcgaattttgacccgagcgacagccacagcctcaccgccttccagccggactggcac
gccggcgtgatcggcatcctggcgtcacggctcaaggacaagttccaccgccccacgatc
gtcttcgcgcaaagcgacagcggcgaactcaagggctcgggccgctcgatccccgggctg
cacctgcgcgacgccctcgacctcgtcgacaagcgccatcccggcctaatccttaagttc
ggcggccacgccatggcggccggcctcagcattgccggcggccgccacgacgatttcagc
cgcgctttcgaggcggtcgtgcgcgagctcatcgacccggccgacctcgagggcatgatc
gagaccgatggcgaactggcgctggaggagcactgctacgaactggccgaacagctcgac
cacgcggtctggggacagggcttccccgcgccgctgttcacggccaccttcgacgtcgtg
gcgcagcgcatcgtcggtgaaaagcacctcaagctcaggctggaacgcgagggggcgtcg
ttcgaggccatgcgcttcttccaccccgatccgctgcccgagcgcattcgcgcggtctac
gcgctgatgcccaacgaattcaatggccagcgtgcgctgcagctgaagctgcagcattgg
gagccggcggagcgcgcctga
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