Thiobacillus sedimenti: VA613_10055
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Entry
VA613_10055 CDS
T10461
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
tsw Thiobacillus sedimenti
Pathway
tsw02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VA613_10055
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
tsw02022
]
VA613_10055
02035 Bacterial motility proteins [BR:
tsw02035
]
VA613_10055
Two-component system [BR:
tsw02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
VA613_10055
Bacterial motility proteins [BR:
tsw02035
]
Pilus system
Twitching motility proteins
VA613_10055
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
Response_reg
AAA_lid_14
HTH_8
AAA_5
Mg_chelatase
HTH_50
HTH_28
HTH_23
HTH_30
GST_C_2
PG_1098_Fer
RACo_linker
Motif
Other DBs
NCBI-ProteinID:
WRS38348
UniProt:
A0ABZ1CH31
LinkDB
All DBs
Position
2039841..2041157
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AA seq
438 aa
AA seq
DB search
MAKIPRILLVDDEPDLLDLMELTLVKMGLETDRAASVAEAQARLAQTRYDLCLTDMRLGD
GEGLQVIEAASTLATPVPVAVITAYGNAGNAVAALKSGAFDYLAKPVALDQLRTLVKSAL
KIPEAAQVEDATRDLIGASAAMQDIRARIAKLARTQAPVHIAGESGSGKELAARLIHRLG
SRADKPFVAVNCGAIPETLMESEFFGYRKGAFTGADADRDGFFQAAHGGTLFLDEVADLP
LSMQVKLLRVLQEKKVRKVGATSEEPVDVRIVSATHQNLSALVEAGRFRQDLYYRLNVIE
LVMPSLRDRTEDIPQLARALLDRLGGADVALDRDAEQALRAYAFPGNVRELENTLERALA
LCEGGHVTAADLNLAPALPPTAAAPGSKYPLQDYLDQTERAAILEALEQTRYNKTAAARL
LGVTFRSLRYRLERLGIE
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagattccgcgcatcctgctggtcgacgacgagcccgacctgctcgacctgatg
gagctgacgctggtgaagatggggctcgagaccgaccgggcggcgagcgtggccgaggcc
caggcccgcctggcgcagacgcgctacgacctgtgcctcaccgacatgcggctgggcgac
ggcgagggcctgcaggtgatcgaggccgccagcacgctggccacgccggtgccggtggcc
gtcatcaccgcctacggcaatgcgggcaacgcggtcgcggcgctgaaatccggcgcgttc
gactacctcgccaagccggtcgcgctcgaccagctgcgcacgctggtcaagtccgcgctg
aagattcccgaggcggcgcaggtcgaagacgccacgcgcgacctgatcggcgcgtcggcc
gcgatgcaggatatccgcgcgcgcatcgccaagctcgcgcgcacccaggcgccggtccac
atcgccggcgaatcgggcagcggcaaggagctcgcggcccggctgatccaccgcctcggc
agccgcgccgacaagcccttcgtcgcggtgaactgcggcgcgattcccgagacgctgatg
gaaagcgagttcttcggctaccgcaagggcgccttcaccggcgccgacgccgaccgcgac
ggcttcttccaggcggcccacggcggcacgctgtttctcgacgaggtcgccgacctgccg
ctgtcgatgcaggtgaagctgctgcgcgtgctgcaggagaagaaggtccgcaaggtcggc
gccacgagcgaggagccggtcgacgtgcgcatcgtcagcgcaacgcaccagaacctgtcg
gcgctggtcgaggccggccgcttccgccaggacctctactaccgcctgaacgtgatcgag
ctcgtgatgccgagcctgcgcgaccgcaccgaggacatcccgcagctcgcgcgcgccctg
ctcgatcgcctgggcggcgccgacgtggcgctcgaccgcgacgccgaacaggcgctccgc
gcctatgccttccccggcaacgtgcgcgagctcgaaaacacgctcgagcgcgcgctggcc
ctgtgcgagggcgggcacgtcacggcggccgacctcaacctcgcgccggcgctgccgccg
acggccgccgcgccggggagcaagtatccgctgcaggactacctcgaccagaccgagcgc
gccgccatcctcgaggcgctggagcagacgcgctacaacaagaccgccgccgcccgcctc
ctcggcgtgaccttccgcagcctgcgctaccggctggagcggctcggcatcgagtaa
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