Thiobacillus sedimenti: VA613_10130
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Entry
VA613_10130 CDS
T10461
Symbol
orn
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
VA613_10130 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsw03019
]
VA613_10130 (orn)
03009 Ribosome biogenesis [BR:
tsw03009
]
VA613_10130 (orn)
Messenger RNA biogenesis [BR:
tsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VA613_10130 (orn)
Ribosome biogenesis [BR:
tsw03009
]
Eukaryotic type
Pre-60S particles
RNases
VA613_10130 (orn)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
pP_pnuc_1
Motif
Other DBs
NCBI-ProteinID:
WRS38362
UniProt:
A0ABZ1CGK1
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All DBs
Position
complement(2052276..2052824)
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AA seq
182 aa
AA seq
DB search
MPLNPTHLLWLDMEMTGLSPDTDRIIELAIVVTDADLNTVAEGPVLVVHQPDEVMNAMDA
WNKGTHGKSGLIDRVRASQLDEAEAEAQMLEFVRQHVPPRTSPMCGNSICQDRRFLARYM
PQLEAFFHYRNLDVSTLKELAKRWRPGLSEAFKKSNKHEALADIYESIDELRYYREHFIR
GE
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgaatcccacgcatctcctctggctcgacatggaaatgaccggcctgtcgccg
gacaccgaccgcatcatcgagctcgccatcgtcgtcaccgatgccgacctcaacaccgtc
gccgaggggccggtgctggtggtccaccagccggacgaggtgatgaacgcgatggacgca
tggaacaagggcacgcacggcaaatccgggctgatcgaccgcgtcagggcgtcgcagctc
gacgaggccgaggccgaggcgcagatgctcgagttcgtgaggcagcacgtcccgccgcgc
acgtcgccgatgtgcggcaattcgatctgccaggaccgccgcttcctggcgcgctacatg
ccgcaactcgaagccttcttccattaccgcaatctcgacgtcagcaccctgaaggaactc
gccaagcgctggcggcccgggctgtctgaggcgttcaagaagtcgaacaagcacgaggcg
ctggcggacatctacgagtcgatcgacgagctccgctactaccgcgagcatttcatccgc
ggcgaatga
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