KEGG   Thiobacillus sedimenti: VA613_10130
Entry
VA613_10130       CDS       T10461                                 
Symbol
orn
Name
(GenBank) oligoribonuclease
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
tsw  Thiobacillus sedimenti
Pathway
tsw03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:tsw00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    VA613_10130 (orn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsw03019]
    VA613_10130 (orn)
   03009 Ribosome biogenesis [BR:tsw03009]
    VA613_10130 (orn)
Messenger RNA biogenesis [BR:tsw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     VA613_10130 (orn)
Ribosome biogenesis [BR:tsw03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    VA613_10130 (orn)
SSDB
Motif
Pfam: RNase_T Rv2179c-like pP_pnuc_1
Other DBs
NCBI-ProteinID: WRS38362
UniProt: A0ABZ1CGK1
LinkDB
Position
complement(2052276..2052824)
AA seq 182 aa
MPLNPTHLLWLDMEMTGLSPDTDRIIELAIVVTDADLNTVAEGPVLVVHQPDEVMNAMDA
WNKGTHGKSGLIDRVRASQLDEAEAEAQMLEFVRQHVPPRTSPMCGNSICQDRRFLARYM
PQLEAFFHYRNLDVSTLKELAKRWRPGLSEAFKKSNKHEALADIYESIDELRYYREHFIR
GE
NT seq 549 nt   +upstreamnt  +downstreamnt
atgcccctgaatcccacgcatctcctctggctcgacatggaaatgaccggcctgtcgccg
gacaccgaccgcatcatcgagctcgccatcgtcgtcaccgatgccgacctcaacaccgtc
gccgaggggccggtgctggtggtccaccagccggacgaggtgatgaacgcgatggacgca
tggaacaagggcacgcacggcaaatccgggctgatcgaccgcgtcagggcgtcgcagctc
gacgaggccgaggccgaggcgcagatgctcgagttcgtgaggcagcacgtcccgccgcgc
acgtcgccgatgtgcggcaattcgatctgccaggaccgccgcttcctggcgcgctacatg
ccgcaactcgaagccttcttccattaccgcaatctcgacgtcagcaccctgaaggaactc
gccaagcgctggcggcccgggctgtctgaggcgttcaagaagtcgaacaagcacgaggcg
ctggcggacatctacgagtcgatcgacgagctccgctactaccgcgagcatttcatccgc
ggcgaatga

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