Thiobacillus sedimenti: VA613_12275
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Entry
VA613_12275 CDS
T10461
Symbol
nirB
Name
(GenBank) nitrite reductase large subunit NirB
KO
K26139
nitrite reductase [NAD(P)H] large subunit [EC:
1.7.1.4
]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw00910
Nitrogen metabolism
tsw01100
Metabolic pathways
tsw01120
Microbial metabolism in diverse environments
tsw01310
Nitrogen cycle
Module
tsw_M00531
Assimilatory nitrate reduction, nitrate => ammonia
tsw_M00615
Nitrate assimilation
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
VA613_12275 (nirB)
Enzymes [BR:
tsw01000
]
1. Oxidoreductases
1.7 Acting on other nitrogenous compounds as donors
1.7.1 With NAD+ or NADP+ as acceptor
1.7.1.4 nitrite reductase [NAD(P)H]
VA613_12275 (nirB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
NIR_SIR
Fer2_BFD
Pyr_redox
Rubredoxin_C
NIR_SIR_ferr
DAO
Pyr_redox_3
Amino_oxidase
NAD_binding_7
FAD_binding_2
NAD_binding_8
AlaDh_PNT_C
GIDA
Trp_halogenase
3HCDH_N
FAD_binding_3
Motif
Other DBs
NCBI-ProteinID:
WRS38769
LinkDB
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Position
complement(2451264..2453684)
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AA seq
806 aa
AA seq
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MKLVMVGNGMAGVRTLEELLKLAPDLYDITVFGAEPHPNYNRILLSPVLAGEQTVDDIVL
NPLDWYREHGITLHLGKKVVQIDRAARRVEADDGTRAAYDRLLLATGSDPFILPVPGADL
EGVIGFRDIADVEAMIRASTQHRHAVVIGGGLLGLEAANGLMKRGMDVTVVHLGPWLMER
QLDEPAARLLQQSLEEKGLRFLLQKQTTELVAGPGGRVAAVRFKEGEAIPADLVVMAVGI
RPSTALAESAGLHCSRGIVVNDTMQTFDPRIYAIGECAAHRGVAYGLVAPLFEQAKVCAN
HLALHGIGRYQGSVTSTKLKVTGIDLFSAGDFAGGEGTEAILYSDPIGGVYKKLVLKDNK
LVGGVMVGDTVDGAWYFSLLRDGRDVSELRDHLMFGQDHCGNLGHQGINKAAAMTDDMEV
CGCNGVCKGDIVKAIREKGLFTLEDVRKHTKASSSCGSCTGLVEQILAATAGGDYSPAPK
TKAMCGCTEHTHEAVRAAIVDNRLLTIPQVMQFMEWRTPDGCASCRPALNYYLISSWPGE
AEDDPQARFINERAHANIQRDGSYSVVPRMWGGQTTPAELRRIAEVAEKYAIPTVKITGG
QRIDLLGVKKADLPKVWADLDMPSGHAYGKALRTVKTCVGSEWCRFGTQDSTRMGIDLEK
VFFKMWAPHKVKLAVSGCPRNCAEVAIKDVGIIGVDSGWEIYVGGNGGIKTEVAQFLVKV
KTPDEVIEHAGAFLQLYREEARYLDRTVHYLERVGLDYVKQKVVDDADGRRALYERLLFA
LSVERDPWVERAAEGKLRHEFETVSA
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgtcatggtcggcaacggcatggccggcgttcgcacgctggaagagctgctg
aagctcgcccccgatctttacgacatcacggtgttcggcgccgagccgcatcccaactac
aaccgcatcctgctgtcgccggtgctggcgggagagcagaccgtcgacgacatcgtgctg
aatccgctcgactggtaccgcgagcacggcatcacgctgcacctcggcaagaaggtcgtg
cagatcgaccgcgccgcgcgccgggtcgaagccgacgacggcacgcgcgcggcgtacgat
cgcctgctgctcgcgaccgggtccgaccccttcatcctgccggtgcccggcgccgacctc
gaaggcgtgatcggtttccgcgacatcgccgatgtcgaggcgatgatccgcgcgtcgacc
cagcaccgccacgccgtcgtcatcggcggcggcttgctggggctggaagccgccaacggc
ctgatgaagcgcggcatggacgtgaccgtggtgcacctcgggccgtggctgatggagcgc
cagctcgacgagccggccgcgcgcctgctgcagcagagcctcgaggagaaggggttgcgg
ttcctgctgcagaagcagaccaccgagctggtcgctggaccaggagggcgcgtcgcggcg
gtccgcttcaaggagggcgaggccatcccggcggacctcgtggtaatggcggtcggcatc
cgccccagcacggcgctcgccgaatcggccggcctgcactgcagccgcggcatcgtggtg
aacgacacgatgcagaccttcgatccgcgcatctatgccatcggcgaatgcgccgcgcac
cgcggcgtcgcctacgggctggtcgcgccgctgttcgagcaggccaaggtgtgcgccaac
cacctggcgctgcatggcatcggccgctaccagggctcggtcacctcgaccaagctgaag
gtgacggggatcgacctgttttcggccggcgacttcgccggcggcgagggcaccgaggcc
atcctctattccgacccgatcggcggcgtctacaagaagctcgtcctcaaggacaacaag
ctggtcggcggcgtgatggtcggcgataccgtcgacggcgcctggtatttctccctgctg
cgcgacggcagggacgtgtccgaactgcgcgaccacctgatgttcggccaggaccactgc
ggcaacctcggccaccaggggatcaacaaggccgcggcgatgaccgacgacatggaggta
tgcggctgcaacggcgtctgcaagggcgacatcgtcaaggcgatccgcgagaaggggctg
ttcacgctggaggacgtgaggaagcacaccaaggcgtcgtcgtcgtgcggctcctgcacc
gggctggtcgagcagatcctcgcggccacggcggggggcgactattcgccggcaccgaag
acgaaagcgatgtgcggctgcaccgagcatacccacgaggcggtgcgcgcggcgatcgtc
gacaacaggctgctgacgatcccgcaggtcatgcagttcatggaatggcgcaccccggac
ggctgcgcgtcgtgccggccggcgctcaactactacctgatctcgagctggcccggcgag
gcggaagacgatccgcaggcgcgcttcatcaacgagcgcgcccacgccaacatccagcgc
gacggcagctactcggtggtaccgcggatgtggggcgggcagaccacgccggccgagctg
cgccgcatcgccgaggtcgccgagaagtacgcgatcccgaccgtcaagatcaccggcggc
cagcgcatcgacctgcttggggtgaagaaggcggacctgcccaaggtatgggcggacctc
gacatgccgtcgggtcatgcctacggcaaggcattgcgcacggtgaagacctgcgtcgga
tccgagtggtgccgcttcggtacgcaggactcgacgcgcatggggatcgacctggagaag
gtgttcttcaagatgtgggcgccgcacaaggtcaagctcgccgtgtccggctgcccgcgc
aactgtgccgaagtcgcgatcaaggacgtcggcatcatcggcgtcgactccggctgggag
atctacgtcggcggcaacggcggcatcaagaccgaggtcgcgcaattcctggtcaaggtg
aagacgcctgacgaggtgatcgagcatgccggcgccttcctgcagctctaccgcgaggag
gcgcgctacctcgaccgcacggtgcattacctcgagcgcgtcggcctcgactacgtgaag
cagaaggtcgtcgacgacgccgacggccgccgtgccttgtacgagcggctgctgttcgcg
ctttccgtcgagcgcgacccctgggtcgagcgcgccgcggagggcaagctcaggcacgaa
ttcgaaaccgtcagcgcatga
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