Thiobacillus sedimenti: VA613_13055
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Entry
VA613_13055 CDS
T10461
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tsw Thiobacillus sedimenti
Pathway
tsw03420
Nucleotide excision repair
tsw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VA613_13055
03430 Mismatch repair
VA613_13055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsw03400
]
VA613_13055
Enzymes [BR:
tsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VA613_13055
DNA repair and recombination proteins [BR:
tsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VA613_13055
MMR (mismatch excision repair)
Other MMR factors
VA613_13055
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
DUF2683
Motif
Other DBs
NCBI-ProteinID:
WRS38920
UniProt:
A0ABZ1CIY6
LinkDB
All DBs
Position
2606247..2608379
Genome browser
AA seq
710 aa
AA seq
DB search
MSTLLDTLNPEQRAAVTLPHESALILAGAGSGKTRVLTTRIAWLIQTGQVSPHGILAVTF
TNKAAKEMLTRISAMLPPSTSLRAGANPRGMWVGTFHGLANRLLRTHWREAGLPQSFQIL
DSADQLSAIKRLMKALNVDTEKYEPKKLQWFINGNKEAGRRARDADAYDDYSMRLAELYE
AYDAQCQREGVADFPELLLRSYELLYRNEPLRQHYQDRFKHILIDEFQDTNTLQYRWLKL
FAGPHTVLFAVGDDDQSIYAFRGANTANMAEFEREFAHGNVIKLEQNYRSHGNILTAANT
LISQNAHRLGKNLWTAEGEGEPIRVFEAYSDQDEASFVVDEAKALNREGVSFSDMALLYR
SNAQSRVLEHALFSAGVAYRVYGGLRFFERQEIKHALAYLRLMTHPEDDGAFLRVVNFPA
RGIGARTLEQLADTAARSGSSLWQAACTGSGKVAGFAKLIEDIKQATTGLTLAETIDHAI
EASGLADYYRADKDGADRLENLNELVNAATLFSEESEDNTLDAFLAHAALEAGEHQAGAG
QDALQLMTVHAAKGLEFHTVFITGLEESLFPHEQSAHEENGLEEERRLMYVAITRARRRL
YLTHAQSRMLHGQVRYGIPSRFLAELPEQVLLHLNRRAEPSYRSVSEPAPRATPANDTGY
RVGQSVAHAKFGTGIIIDFEGRGADARVQVKFRDAGTKWLALAYAKLSPA
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccctgctcgataccctcaaccccgaacagcgcgccgcggtgacgttgccgcac
gagtccgcgctgatcctggcgggggcaggatcgggcaagacgcgcgtgctgaccacccgc
atcgcctggctgatccagaccggccaggtgtcgccgcacggcatcctcgcggtgaccttc
accaacaaggcggccaaggagatgctgacgcgcatctcggcgatgctgcccccttcgaca
tcgctcagggcaggggccaacccgcgcggcatgtgggtcggcaccttccacgggctggcc
aaccggctgctgcgcacgcactggcgcgaggccggcctgccgcagtcgttccagatcctc
gattcggccgaccagttgtcggcgatcaagcgcctgatgaaggcgctgaacgtcgacacc
gagaaatacgagccgaagaagctgcagtggttcatcaacggcaacaaggaggccggacgc
cgtgcgcgcgacgccgacgcctacgacgactactcgatgcggctggccgaactctacgag
gcctacgacgcgcagtgccagcgcgagggcgtggcggattttcccgagctgctgctgcgc
tcctacgagctcctgtaccgcaacgagccgctgcgccagcactaccaggaccgcttcaag
cacatcctgatcgacgagttccaggacaccaacacgctgcagtatcgctggctcaagctc
ttcgccggcccgcacacggtgctgttcgcggtcggcgacgacgaccagtcgatctacgcc
ttccgcggcgccaacacagccaacatggccgagttcgagcgcgaattcgcccatggcaac
gtgatcaagctggagcagaactaccgcagccacggcaatatcctgaccgccgccaacacg
ctcatttcccagaacgcgcaccgcctcggcaagaacctgtggaccgcggaaggcgaaggc
gaaccgatccgcgtgttcgaagcctattcggaccaggacgaggcgagcttcgtcgtcgac
gaggccaaggcgctgaatcgcgagggcgtgtcgttctccgacatggcgctactgtaccgc
tccaacgcgcaatcccgggtcctggagcacgccctgttctcggccggcgtcgcctaccgc
gtctacggtggcctgcgcttcttcgagcgccaggagatcaagcacgcgctcgcctacctg
cgcctgatgacgcacccggaggacgacggcgccttcctgcgcgtggtgaacttccctgca
cgcggcatcggcgcgcgcaccctcgagcagctcgccgacacggccgcgcgttccggatcg
agcctgtggcaggcggcctgcacgggcagtggcaaggtcgccggcttcgccaagctgatc
gaggacatcaagcaggcgaccaccggcctcacgctcgccgagacgatcgaccacgcgatc
gaggcctccggcctggccgactattaccgcgcggacaaggacggcgccgaccgcctggag
aacctcaacgaactcgtcaacgcggcgacgctgttctcggaggaatcggaagacaacacg
ctggatgccttcctggcgcatgccgcgctggaagccggcgagcaccaggccggtgccggc
caggacgcgctgcagctgatgaccgtgcacgccgccaaaggcctcgaattccacaccgtg
ttcatcaccgggctggaggaaagcctgtttccgcacgagcagagcgcgcacgaggagaac
ggactggaggaagaacgccgcctgatgtacgtggcgatcacgcgcgcgcggcgccgcctg
tacctgacccacgcgcagtcgcgcatgctgcatggccaggtgcgctacggcatcccgtcg
cgcttcctcgcggaactgccggagcaggtgctgctgcacctcaaccgccgcgccgagccg
agctaccgttcggtcagcgaaccggcgccgcgcgcaacacctgcgaacgacaccggctac
cgcgtcgggcagagcgtcgcccacgccaagttcggcaccggcatcatcatcgatttcgaa
gggcgcggcgccgacgcgcgggtgcaggtgaaattccgcgacgccggcaccaagtggctg
gcgctcgcctacgccaagctgtcgccggcctga
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integrated database retrieval system
