Thalassobellus suaedae: RHP49_02600
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Entry
RHP49_02600 CDS
T10801
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsx Thalassobellus suaedae
Pathway
tsx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHP49_02600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsx03019
]
RHP49_02600
03009 Ribosome biogenesis [BR:
tsx03009
]
RHP49_02600
Enzymes [BR:
tsx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RHP49_02600
Messenger RNA biogenesis [BR:
tsx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHP49_02600
Ribosome biogenesis [BR:
tsx03009
]
Prokaryotic type
rRNA helicases
RHP49_02600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
HTH_CLF_N
FliG_M
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WNH13151
UniProt:
A0ABY9Y4H2
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All DBs
Position
602966..604807
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AA seq
613 aa
AA seq
DB search
MSTFQELGLNDDLLRAITDLGFIKPSEVQEKAIPILLESETDLVALAQTGTGKTAAFGFP
MLEKIDIDSRTTQGLILSPTRELCLQITNEIKAYGKYCKGLNVVAIYGGSSISDQARDVK
RGAQIIVATPGRMKDMISRRMVDISKIQYSVLDEADEMLNMGFKEDITDILSHTPKEKNT
WLFSATMPREVATIAKKFMVNPQEITVGNKNESTSNVSHEYYLVNSRDRYQALKRLSDAN
PDIFSVIFCRTKRDTQKVAENLIEDGYSAGALHGDLSQNQRDMVMKSFRNQQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRKIKSIERI
IKKQFDKKEIPDGADICEVQLMSLANKIHNTEINHEIDKHLTSINELFADTDKDELIKKF
FSVEFTRFYNYYQKSKNLNVSESPRDREGGRESSRDFGGNSDSTRYFINVGSKDGFDWMK
LKDFLKEVLELGRDDVFKVEVKESFSFFNTENEQKEKVLAFFTDYKHEGRFVNVEVSENR
GGGGRRNDRRGGGKRRDDKRGGGERRSGSKSDSGRRSGDFKSSNSGPNRSERRSSSASKS
GNSGSDRPRRSRR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattccaagaactaggtctaaatgatgaccttttacgcgctatcactgattta
ggatttattaaaccaagtgaagtacaagaaaaagcaatcccaattttattagaatcggaa
accgatttagtagcattagcacaaacaggaactggtaaaacagcagcctttggttttcct
atgttagaaaaaattgatattgatagccgaacaactcaaggtcttattttatcgcctaca
cgtgagctttgtttacaaataaccaatgaaattaaagcttacggcaagtactgtaaaggc
ttaaatgtagttgctatttatggtggatcgagcatttcagatcaagcaagagacgttaaa
agaggcgcacaaattattgtagcaacgcctggtcgtatgaaagatatgattagcagacgt
atggttgatatttctaaaatacaatacagtgttttagatgaagctgatgaaatgctaaac
atgggttttaaagaagatattactgatattctttctcacacaccaaaagaaaaaaatacc
tggttattttctgcaaccatgccaagagaagtagcaactattgctaaaaaattcatggtt
aacccacaggaaattactgttggaaataaaaatgaaagtacaagcaacgtttctcatgaa
tactatttagttaattctagagaccgttaccaagctttaaaacgtttatcggatgctaat
cctgatatattttctgttattttctgtagaacaaaacgtgatactcaaaaagtagctgag
aacttaattgaagatggttatagcgctggcgctttacacggcgatttaagtcagaatcaa
cgtgatatggttatgaaatcgtttagaaatcaacaaatacaaatgcttgtagcgactgat
gttgctgctcgtggtattgatgtagacgatattacacacgttataaactaccaattacca
gacgaaattgaaacttacacacaccgttctggacgtacaggacgtgctggaaaaacaggg
gtttctatggtaattgtatcaaaaagtgaagtacgcaaaataaaaagtattgagcgtatt
ataaaaaaacaatttgacaaaaaagagattcctgatggtgccgatatttgcgaagtacaa
ttaatgtcgctagctaataaaattcacaatacagaaattaatcatgaaattgataaacac
ttaactagtattaacgaattgtttgctgatactgataaagatgaattgattaaaaaattc
ttctcggtagaattcacacgtttctataattactatcaaaaatctaaaaacttaaatgtt
tctgaaagtcctagagatagagaaggcggtcgtgaaagcagtagagattttggtggaaat
tctgattctacacgttattttataaacgttggtagtaaagatggcttcgattggatgaag
ttaaaagacttcttaaaagaagttcttgaacttggtagagatgatgtttttaaagtagaa
gtaaaagagagtttctctttctttaatactgaaaacgaacaaaaagaaaaagtacttgcg
ttctttacagattataaacacgaaggacgttttgtaaatgttgaagtttcagaaaaccgc
ggtggtggtggaagacgcaacgacagacgtggtggcggcaaacgtcgtgatgataaacgt
ggtggcggagaaagacgttctggatctaaaagtgattctggaagaagaagtggcgatttt
aaatctagcaattctggacctaatagatcagaaagacgctctagttctgcttcaaaatca
ggtaattctggttcagacagaccaagacgttcacgtagataa
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