Thalassobellus suaedae: RHP49_03155
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Entry
RHP49_03155 CDS
T10801
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tsx Thalassobellus suaedae
Pathway
tsx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHP49_03155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsx03019
]
RHP49_03155
Enzymes [BR:
tsx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RHP49_03155
Messenger RNA biogenesis [BR:
tsx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHP49_03155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
Shikimate_DH
Fe-ADH
CobT
AAA_22
DUF7115
Motif
Other DBs
NCBI-ProteinID:
WNH13260
LinkDB
All DBs
Position
complement(729671..730954)
Genome browser
AA seq
427 aa
AA seq
DB search
MSFKSLGLSEALLKAISKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLL
HILSETPKEKYRPIRALILTPTRELAAQVYANVKEYSEFLNLRSAVIFGGVNQKPQAATI
RQGIDVLVATPGRLLDLQNQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVIKSMPEKRQ
NLMFSATFSKDIKKLAHGILNHPVQVEATPENTTVDAISQKVYRVAKGLKTGLIIKLISE
GNWKQVLVFTRTKHGANKLCEKMSKSGITAAAIHGNKSQGARTKALAGFKNGSVRVLVAT
DIAARGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGASGEALSLVSADETTFLRDIEK
LIEMKLPVEIEEGFEPDPNASTEPVKQGQGRQNRNTRNSNSSRGSNTSSSDKKTNSRRPK
RNTDRRH
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaatcattaggcttatctgaggccttgctaaaagctattagcaaaaaagga
tacacaacaccatctccaattcaagaaaaagcgattcctcctgttttagaaggaaaagat
gttctagcatcggctcaaacaggaacgggaaaaacggcaggttttacattgccactttta
catatactttctgaaacaccgaaagaaaaatacagacccattcgtgctttaattttaacg
ccaacacgcgaattagcagcacaggtatatgctaatgttaaagaatacagcgaattttta
aatttacgaagtgcggtcatttttggtggtgttaaccaaaagccacaagcagcaactatt
cgacaaggtattgatgttttagtagctactccagggcgtttgttagatttacaaaatcaa
ggattattatcacttaagcgtgttgagatttttgtgttagatgaagcagatagaatgcta
gatatgggttttttacgcgatatagaacgtgttataaaatcgatgccagaaaagcgacaa
aatttaatgttttcggcgacgttttctaaagatattaagaagttagcacatggtatttta
aatcatcctgtacaggttgaagcaactccagaaaatacaacagttgatgctattagtcaa
aaagtatacagagtagcaaaaggtttaaaaacaggattaattattaaattaatttctgaa
ggtaattggaaacaggttttagtatttactcgaacaaaacatggcgctaataagctttgt
gaaaaaatgagtaaatcgggtattacagcagcggctatacacggaaataaaagtcaggga
gcaagaacaaaagcattagcaggttttaaaaatggtagtgttcgagtgttagtagcaacc
gatattgctgctcgtggattggatattcctttattaccacatgttataaattttgaattg
ccgaatatatctgaggattatgtgcatagaatcggtcgaacaggtcgagcaggagccagt
ggtgaagctttatcgttagtaagtgcagatgaaactacttttttaagagatattgaaaag
ttaattgaaatgaaactacctgttgaaatagaggaagggtttgaacccgatcctaatgct
tcaacagaacctgtaaaacaaggacaagggcgtcaaaatagaaatacaagaaattctaat
agttctcgtggttctaatactagtagttcagacaagaagactaattctagacgaccaaaa
cgtaataccgatagacgtcattaa
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