Candidatus Thiodictyon syntrophicum: THSYN_05670
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Entry
THSYN_05670 CDS
T05211
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tsy
Candidatus Thiodictyon syntrophicum
Pathway
tsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THSYN_05670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsy03021
]
THSYN_05670
03400 DNA repair and recombination proteins [BR:
tsy03400
]
THSYN_05670
Enzymes [BR:
tsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THSYN_05670
Transcription machinery [BR:
tsy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THSYN_05670
DNA repair and recombination proteins [BR:
tsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THSYN_05670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
DUF7118
Motif
Other DBs
NCBI-ProteinID:
AUB80484
UniProt:
A0A2K8U4H7
LinkDB
All DBs
Position
1319141..1323352
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLKIIKQQGQALEFDAIKIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPISDYECVCGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVIDPNMVPNLERNQLLTDEQYLEALEENGDEFDAR
MGAEAIYELLRTIDVQAEVRRMREEIETTNSETKIKKLAKRLKLMESLIDSGNRPEWMIL
TVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QEAVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP
TLRLHQCGLPKRMALELFKPFIFSKLQLRGQAATIKAAKKMVERGTPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQIE
ARALMMASNNILSPANGEPIIVPSQDVVLGLYYTTRERVNAKGEGSVFCDIDEARRAYET
GHADLQARVRVRIREVIKEEDDTLREVVSIKSTTLGRALVFAIVPDGLPFDLVDRALGKK
AISKLINTCYRRLGLKATVVFADQIMYMGFRMATRSGVSIGLDDMAVPEEKPGILAEAEK
QVKEIEEQYASGLVTNGERYNKVIDIWSHTNDQVAKSMMSKLGKQMVPDREGTLVQQDSF
NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVIQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDMVVLETDCGTEKGLLMSPIIEGGDVVEPLRERV
LGRVVSTDVYVPGTDELICAAGSMLDESMVERFAVAGIDQLRVRSPITCQSRIGVCAQCY
GRDLARGHRVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTAAVSSIEMKNGGSIR
LHNIKTVRHHTGNLVAVSRSGELTVVDDKGLEKERYKVPYGATLRVADGDIVVGGQVVAN
WDPHTHPVVTEVAGKLEFEDFIEGVTVQAQVDDVTGLTSRVVIDPKQRPATGKDLRPMIK
LLGEDGKALNLVGTDLPAVYFLTANAIVSVEDLAHVGVGDILARIPLESSKTRDITGGLP
RVADLFEARKPKEQALLAEASGTIGFGKDTKGKQRLVITKDDGETVEELIPKWRHVNVFE
GERVERGEVIADGELASHDILRLKGVTALAEYLVKEIQDVYRLQGVKINDKHIEVIVRQM
LRKVEIISPGDTRLLRGEQVEYSHMMDENARVIAEGKEPALYEPLLLGITKASLATESFI
SAASFQETTRVLTEAAVRGSNDRLTGLKENVIVGRLIPAGTGLAYHNERKRLRREQDRAS
GKIEMDTEELEEALKKALNTSEG
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagaccttctgaagattatcaagcagcagggccaggccctcgaattcgatgcgatc
aagatcgggctggcctcgcccgagatgatccgttcctggtccttcggtgaggtgaagaag
cccgagaccatcaactaccgcaccttcaaaccggagcgcgacgggctcttctgcgccaag
atcttcggccccatcagcgactacgagtgcgtctgcggcaagtacaagcgcctgaagcac
cgcggcgtggtgtgcgagaagtgcggcgtggaggtgacgctcgccaaggtccggcgcgag
cgcatgggtcacatcgatctggcgagcccggtggcccacatctggttcctgaagtcgctg
ccctcgcgcatcgggctcctgctcgacatgacgctgcgcgacatcgagcgcgtgctctat
ttcgagtccttcgtggtcatcgacccgaacatggtgccgaacctggagcgcaaccagttg
ctgacggatgagcaatatctggaggccctggaggagaacggggacgaattcgacgcccgt
atgggcgccgaggcgatctatgaactcctgcgcaccatcgacgtccaggccgaggtccgg
cggatgcgcgaggagatcgagaccaccaactccgagaccaagatcaagaagctcgccaag
cgcctgaagctcatggagtcgctgatcgactccggcaaccggcccgagtggatgatcctg
accgtgctgccggtgctgcccccggagctgcgccccctggtgccgctcgacggcgggcgc
ttcgccacctcggatctcaacgacctctaccggcgcgtcatcaaccgcaacaaccgcctg
aagcggctgttggacctggtggcgccggacatcatcgtgcgcaacgaaaagcgcatgttg
caggaggcggtcgacgccctgctggacaacggccgccgcggccgtgccatcaccggcacc
aacaagcgcccgctcaaatcgctggccgacatgatcaagggcaagcaggggcgcttccgc
cagaacctgctcggcaagcgcgtcgactactcgggccgctcggtgatcgtggtcggcccg
acgctgcgcctgcaccagtgcggcctgcccaagcgcatggccctggaactcttcaagccc
ttcatcttcagcaagctgcaactgcgcggccaggcggccaccatcaaggcggccaagaag
atggtggagcggggcaccccggaggtctgggacatcctggaagaggtgatccgcgagcac
ccggtgatgttgaaccgcgcccccaccctgcaccgcctgggcatccaggccttcgagccg
gtgctgatcgagggcaaggcgatccaactgcatccgctcgtctgtaccgccttcaacgcc
gacttcgacggcgaccagatggcggtgcatgtgcccctgtcgctggaggcgcagatcgaa
gcgcgcgccctcatgatggcgagcaacaacatcctctcgcccgccaacggtgagccgatc
atcgtgccctcgcaggacgtggtgctggggctctattacacgacgcgcgaacgggtcaac
gccaagggcgagggcagcgtcttctgcgatatcgacgaggcgcggcgcgcctacgagacc
ggccacgcggacctgcaggcgcgggtgcgggtgcgtatccgcgaggtcatcaaggaggag
gacgacaccctgcgcgaggtcgtgagcatcaagtcgacgacactcgggcgcgcgctggtg
ttcgccatcgtccccgatggcctgcccttcgacctggtggaccgggcgctcggcaagaag
gcgatctccaagctcatcaatacctgctatcgccgcctggggctgaaggcgaccgtggtc
ttcgccgaccagatcatgtacatgggattccgcatggccacccgctcgggtgtctccatc
ggcctggacgacatggcggtcccggaggagaagcccggcatcctggccgaggccgagaag
caggtcaaagagatcgaggagcaatatgcctcgggcctggtcaccaacggcgagcgctac
aacaaggtcatcgacatctggtcccacaccaacgaccaggtggccaagtccatgatgtcg
aagctgggcaagcagatggtcccggatcgtgaaggtaccttggtgcagcaggactccttc
aactccatctacatgatggctgactccggcgcccgcggctcggccgcccagatccgtcag
ctcgccgggatgcgcgggctcatggccaagcccgacggctccatcatcgagaccccgatc
acggccaacttccgtgaaggactcaacgtcatccagtacttcatctccacccacggcgcc
cgcaagggcctggcggatacggcgctcaagaccgccaactccggttatctgacccgccgg
ctggtggacgtggcccaggacatggtggtgctggagaccgactgcgggaccgagaaggga
ctcctgatgtcgcccatcatcgagggcggcgacgtggtcgagcccctgcgcgagcgggtg
ctggggcgcgtggtgtccacggatgtctatgtcccggggaccgacgagctgatctgtgcc
gccgggtcaatgctggatgagtcgatggtggagcgcttcgcggtggccggtatcgaccag
ttgcgggtgcgctcacccatcacctgtcagtcgcgcatcggcgtctgcgcccagtgctac
gggcgcgatctggcgcgcggacaccgggtcaacatgggtgaggcggtgggggtcatcgcc
gcccagtcgatcggcgagcccggcacccagctcacgatgcggaccttccacatcggcggc
gccgcctcccggacggccgccgtcagcagcatcgagatgaagaacggcggttcgatccgg
ctgcacaacatcaagacggtgcgccaccacaccggcaacctggtcgcggtgtcgcgctcc
ggcgaactgacggtggtcgacgacaagggcctggaaaaggagcgctacaaggtcccctac
ggggcgaccctgcgggtggccgacggcgacatcgtggtcggcggccaggtggtcgccaac
tgggacccgcatacccacccggtggtcaccgaggtggccggcaaactggagttcgaggac
ttcatcgagggcgtgaccgtgcaggcccaggtcgacgacgtgaccgggctgacctcgcgt
gtggtcatcgaccccaagcagcgcccggccaccggcaaggacctgcgccccatgatcaag
ctgttgggcgaggacggcaaggcgctcaacctggtcggcacggatctgcccgccgtctac
ttcctgacggcgaacgccatcgtcagcgtcgaggacctggcgcacgtcggggtcggcgac
atcctggcgcgcatcccgctggagtccagtaagacgcgcgacatcaccggcggtctgccg
cgggtcgcggatctgttcgaggcgcgcaagcccaaggagcaggcgctgctggcggaggcc
agcggtaccatcggcttcggcaaggacaccaagggcaagcagcggctggtgattaccaag
gacgacggcgagacggtggaggagttgatccccaagtggcgccacgtcaacgtcttcgag
ggcgagcgcgtggagcgcggcgaggtgatcgcggacggcgaactcgcctcccacgacatc
ctgcggctcaaaggcgtcaccgcgctggccgaatatctggtcaaggagatccaggacgtc
taccggctccagggcgtgaagatcaacgacaagcacatcgaggtgatcgtccgccagatg
ctgcgcaaggtcgagatcatctcccccggcgacacccgtctgctgcgcggcgagcaggtc
gaatacagccacatgatggacgagaacgcgcgggtcatcgccgagggcaaggagccggcc
ctctatgagcccctgctgctgggcatcaccaaggcctcgctcgccaccgagtcattcatc
tcggccgcctcgttccaggagacgacccgggtcctgaccgaggccgcggtgcgcggctcc
aacgaccgcctgaccggcctcaaggaaaacgtcatcgtcggccgcctgatccccgccggc
accgggctcgcctaccacaacgagcgcaagcgcctgcgccgcgagcaggaccgcgcctcc
ggcaagatcgagatggacaccgaggagttggaagaggcgctcaagaaggcgctcaatacc
tccgagggctaa
DBGET
integrated database retrieval system
