Candidatus Thiodictyon syntrophicum: THSYN_05880
Help
Entry
THSYN_05880 CDS
T05211
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tsy
Candidatus Thiodictyon syntrophicum
Pathway
tsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THSYN_05880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsy03019
]
THSYN_05880
03400 DNA repair and recombination proteins [BR:
tsy03400
]
THSYN_05880
Enzymes [BR:
tsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THSYN_05880
Messenger RNA biogenesis [BR:
tsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THSYN_05880
DNA repair and recombination proteins [BR:
tsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
THSYN_05880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
HTH_40
HRDC
Helicase_C
ResIII
Sigma70_r4_2
DNA_pol_A_exoN
HTH_24
GerE
HTH_29
Motif
Other DBs
NCBI-ProteinID:
AUB80524
UniProt:
A0A2K8U4L4
LinkDB
All DBs
Position
complement(1366861..1369080)
Genome browser
AA seq
739 aa
AA seq
DB search
MNPDPLEVLNRVFGYPHFRGAQQEVIERVLQGGDALVLMPTGGGKSLCYQIPALLRPGTG
IVVSPLIALMQDQVDALRQLGVRAAFLNSSLAGDEQSRVERALLAGGLDLLYVAPERLLT
ERFLDLLGRVPVALFAIDEAHCVSQWGHDFRPEYIQLNLLHERWPAVPRIAVTATADAPT
RREIVTRLALEQAAQFVSSFDRANIRYHVTEKREPRQQLVAFLRAEHPEDAGIVYCLSRR
KVEETAEHLCVQGFKALAYHAGLPAEQRRTHQAQFLRGEGVIVVATIAFGMGIDKPDVRF
VAHLDLPKSLEAYYQETGRAGRDGQPADAWMTYGLGDVVALRRFIEESEAEEQFKRVELH
KLNALLGFCETTECRRQVMLNYFGEQLPAPCGNCDTCLTPVASWDGTLAAQKAMSCIFRT
GQRFGVNYLIEVLRGKDDERIRRYGHDQISTFGIGADFSVEQWRSVYRQLVAAGLVAVDI
EGHGALQLTESSRPVLRGERVLRLRRDPERRPAKTRGEPRPVRVETPLDPEAQTLWERLR
AYRRDLAQEQAVPPYVVFSDATLREMVSYRPRDLNEFSRISGVGVVKLERYGAGFLSQLA
AHAQEHGRPAQVPPLPETPMRAPAPPAAPADGRVWEEGLNDTTRVTLELLRTGLSPAQIA
ERRELKPSTIYTHLSRCIEEDELSLAEIVTLADDELQAIEYAFTQLAPESPLTLKPVFDA
FEGKYDYGLLRCVRAAMGR
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagacccgcttgaggtattgaaccgagtcttcggctacccgcactttcgcggc
gcccagcaggaggtcatcgagcgggtcctgcagggcggcgatgccctggtcctgatgccg
accggcggcggcaagtcactgtgctatcagatcccggccctgctgcggccggggaccggg
atcgtcgtctccccgctcatcgccctgatgcaggaccaggtggatgcgctgcgccaactc
ggggtgcgggccgcctttctgaactcctcgctcgccggcgacgaacagtcgcgggtggag
cgggcgttgctggccggggggctcgacctgctctatgtcgccccggagcggctcttgacc
gagcgtttcctggatctgctggggcgggtgccggtcgcgctcttcgccatcgacgaggcg
cactgtgtctcccaatggggccacgacttccgccctgagtatatccagctcaacctgctg
cacgagcgctggccggcggtaccccgcatcgcggtcaccgccaccgccgacgccccgacc
cggcgcgagatcgtcacccgcctggcgcttgagcaggcggcccagttcgtctccagcttc
gaccgggccaacatccgctaccacgtcaccgagaagcgcgagccgcgccaacagctcgtc
gccttcctgcgcgccgagcaccccgaggacgccggcatcgtctattgcctgtcgcggcgc
aaggtcgaggagacggcggagcacctgtgcgtccaggggttcaaggccctggcctaccac
gccgggctgccggccgagcagcggcgcacccaccaggcgcagtttctgcgcggcgagggg
gtcatcgtcgtcgccaccatcgccttcggcatgggcatcgacaagccggacgtgcgcttc
gtcgcccacctggacctgcccaagagcctggaggcctactaccaggagaccggccgcgcc
gggcgcgacggccagccagccgacgcctggatgacctatggcctgggcgacgtggtggcg
ctacggcgcttcatcgaggagtcggaggccgaggagcagttcaagcgcgtggagttgcac
aagctcaatgccctgctcggcttctgcgagaccaccgaatgtcgccgccaggtcatgctc
aactatttcggcgagcaactccccgccccctgcggcaactgcgacacctgcctgaccccg
gtggcgagctgggacggcaccctggccgcccagaaggccatgtcctgcatcttccgcacc
ggccagcgcttcggcgtcaattatctgatcgaggtcctgcgcggcaaggacgacgagcgc
atccgccgctacggccacgaccagatcagcaccttcggcatcggcgcggacttcagcgtc
gagcagtggcgctcggtctaccggcaactggtcgccgccggcctggtcgcggtcgacatc
gagggccacggggccctgcaactcaccgagtcgagccgcccggtcctgcgcggcgagcgg
gtgctgcgcctgcgccgcgatccggagcggcgcccggccaagacccggggcgagcccagg
cccgtacgggtggaaaccccgctcgacccggaggcgcagaccctctgggaacgcctgcgc
gcctaccggcgcgaccttgcgcaagaacaggcagtcccgccctatgtggtcttcagcgac
gcaacgctgcgcgagatggtcagctaccgaccgcgggatctgaacgagttcagccgcatc
agcggggtgggcgtggtcaagctggagcgctacggcgccggcttcttaagccagttggcc
gcacacgcccaggagcacggccgccccgcccaggtaccgcccctgcccgagacccccatg
cgcgccccggccccgcccgccgcccccgccgacggacgcgtctgggaggagggcctgaac
gacaccacgcgcgtcaccctggagctcctgcgcaccgggctctcacccgcccagatcgcc
gagcgccgggagctcaagcccagcaccatctatacgcacctctcgcgctgtatcgaagag
gacgaactgtccctggccgagatcgtcaccctggcggacgacgaactccaggccatcgaa
tacgccttcacccaactggccccggagtcgccgctcaccctcaaaccggtcttcgacgcc
ttcgagggcaaatacgactatggcctgctgcgctgcgtgcgggcggcgatggggcggtag
DBGET
integrated database retrieval system
