Candidatus Thiodictyon syntrophicum: THSYN_06440
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Entry
THSYN_06440 CDS
T05211
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tsy
Candidatus Thiodictyon syntrophicum
Brite
KEGG Orthology (KO) [BR:
tsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsy03016
]
THSYN_06440
Enzymes [BR:
tsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
THSYN_06440
Transfer RNA biogenesis [BR:
tsy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
THSYN_06440
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AUB80626
UniProt:
A0A2K8U4V9
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Position
1506691..1508517
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AA seq
608 aa
AA seq
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MSTHQPSPPANSLVLYKVHPARIVNLGEKIEIELAGGQSKRVRAKDIELLHPGPLRSLTE
LAPQQGEPEAAWELLEGAETTLQELAELAFNAFTPATAWAAWQLVADGLSFSGTPAAIRA
RTREEVERIRAERGAKANAESDWQAFLVRMADSCPAPEDGARLGEVERLALGQSERSRIL
EALGHEQTPINAHRALIQVGYWTDRHNPYPRRCAVPTAEPGQPVPGLIEEDRLDLTALPA
YAIDDVGNQDPDDALSLDGDCLWVHVADVAALVATEGEIEREARARGSNLYLPEGVINML
PAGVTEALGLGLQPLSPALSFALRCDDQGELLSVAVHRTWIRAQRLTYDEVDGRLTEEPF
AALRALTDRFRARRTAAGATSLDLPEVSVRVEDGRVTIRPLPRLASRELVADAMLMAGEG
AARFCLEHAIPIPFATQAPPEAGEQPRDLAAMYARRRAFKPSRLVGAPDPHAGLGLALYT
RATSPLRRYSDLLVHQQIRAWLAGLPTLTAEQVTERIGEAETAAALVRRTERLSNLHWKL
VYLKDHPDWQGQATIVGKEDRKGVALVPLLALETRLRLREEPALNQGLRVAVRDVDIPAQ
TVSFRVLG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgacacatcaacccagccccccggcgaacagcctggtgctctacaaggtccatccc
gcgcgcatcgtcaacctgggcgaaaagatcgagatcgagctggcgggcgggcagtccaag
cgggtgcgggccaaggacatcgaactgctccaccccgggccgctgcgcagtctcacggaa
ctcgcgccccagcagggggagccggaggccgcctgggaactgctggagggcgccgagacg
accctgcaggagttggccgaactcgccttcaatgcctttaccccggctactgcctgggcc
gcctggcagttggtggcggacggcctgagcttcagcggcacgcccgcggccatccgcgcc
cgcacccgtgaggaggtggagcgcatccgggccgagcgtggggccaaggcgaacgccgag
agcgactggcaggccttcctggtgcggatggcggactcatgcccggccccggaggacggg
gcacgcctgggtgaggtggagcgcctcgccctggggcagagcgagcgcagccgcatcctg
gaggccctggggcacgagcagaccccgatcaacgcccaccgggcactgatccaggtgggc
tactggacggatcggcacaatccctatccgcggcgctgcgcggtgcccaccgcggagccc
gggcagccggtcccagggctcatcgaagaggaccggctcgacctcaccgcgctgcccgcc
tacgcgatcgacgacgtgggcaatcaggacccggacgacgcgctgagcctcgacggtgac
tgcctctgggtccatgtggcggacgtcgccgcgctggtcgcgaccgaaggcgagatcgag
cgggaggcgcgggcgcgcgggagtaatctgtatctcccggagggggtcatcaacatgctg
ccggcgggcgtgaccgaggccctggggttggggttgcaaccgctctcgcccgccctgtcg
ttcgccctgcgctgcgacgatcagggggaactgctgtcagtggcggtccatcgcacctgg
atccgcgcccagcgactcacctatgacgaggtggacggccgcctgacggaggagcccttc
gctgccctgcgcgccctgaccgatcgctttcgcgcccgtcggacggccgccggggcgacc
agcctggatctcccggaggtgagcgtgcgggttgaggacggccgggtgacgatccgcccc
ctgccgcggctggcgagccgggagttggtcgcggacgccatgctgatggccggggagggt
gcggcgcgcttttgtctggagcacgccatcccgatcccctttgcgacccaggccccgccc
gaggccggcgagcaaccgcgcgacctggccgcgatgtatgcccgccgccgggccttcaag
ccgtcgcgcctggtgggggcgccggacccgcacgcggggctggggctggcgctctacacc
cgggcgaccagccccttgcggcgctactcggatctgctggtccatcagcagatccgtgcc
tggctcgccggtctgccgaccctgacggcagagcaggtgaccgagcgcatcggcgaggcc
gagacggccgcggccctggtgcggcgcaccgagcggctgtcgaacctgcactggaaactc
gtctacctcaaggaccacccggactggcagggccaggcgaccatcgtcggcaaggaggac
cgcaagggtgtggccctggtgccactgctggccctggagacgcggctgcgcctgcgcgaa
gagccggcgttgaaccagggcctgcgggtggcggtgcgcgatgtcgatatcccggcccag
acggtcagttttcgggtattgggctga
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