Candidatus Thiodictyon syntrophicum: THSYN_26060
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Entry
THSYN_26060 CDS
T05211
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
tsy
Candidatus Thiodictyon syntrophicum
Pathway
tsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THSYN_26060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsy03400
]
THSYN_26060
DNA repair and recombination proteins [BR:
tsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THSYN_26060
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
THSYN_26060
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AUB84058
UniProt:
A0A2K8UER0
LinkDB
All DBs
Position
complement(6126133..6128142)
Genome browser
AA seq
669 aa
AA seq
DB search
MSKPFQLVAQFAPAGDQPEAIRRLVEGLNDGEAAQTLLGVTGSGKTFTIANVIAQVQRPA
LILAPNKTLAAQLYGEMRDFFPHNAVEYFVSYYDYYQPEAYIPASDTYIEKDSSINEHIE
QMRLSATKALLERPDVIIVASVSSIYGLGDPDAYLRMVLHLTRGDVIDQRALLRRLADLQ
YRRNEIELARGTYRVRGDVIDIHPAESDEEAIRIELFDDEIEALSVFDPLTGEVLRRVPR
YTVFPKTHYATPRETILNAVDEIKVELKDRLIWLRDNDKLVEAQRLEQRTIFDMEMMMEV
GYCSGIENYSRYLSGRGPGEPPPTLYDYLPANAIVVIDESHVTVPQLGGMYRGDRSRKEN
LVDYGFRLPSALDNRPMRFEEFQARQPQTIYVSATPRQYELDHSGGAVVEQVVRPTGLVD
PDLEVRPALSQVDDLLSEITLRAAVHERVLVTTLTKRMAEDLTEYLNEHGVKVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSEGSLIQTIG
RAARNINGKAILYADRITGSMERAMGETERRRTKQTAFNLAHDITPQSIQKSVADILEGS
TPGAPRSARAYARVAEEIAEYANLTPVQMAKKIKALEKEMYGYAKDLEFEKAAAVRDRIK
ELQGKGLAV
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacccttccagttggtcgcccagttcgcccccgccggtgaccagccggaggcg
atccgccgcctggtcgagggtctcaacgacggggaggcggcccagaccctgctcggcgtc
accggttccggcaagaccttcaccatcgccaacgtcattgcgcaggtccagcgcccggcc
ctgatcctggcgccgaacaagaccctcgcggcccagctctatggcgagatgcgcgacttt
ttcccgcacaacgcggtggaatacttcgtctcctattacgactattaccagcccgaggcc
tatatcccggcctccgacacctatatcgaaaaggactcatcgatcaacgaacatatcgaa
cagatgcgcctgtcggcgaccaaggccctgttggagcgcccggacgtcatcatcgtggcg
agtgtctcgagcatctacggcctgggcgacccggatgcctatctcaggatggtcctgcac
ctgacgcgcggcgatgtgatcgaccagcgcgccctgctgcggcgcctggcggacctgcaa
taccgccgcaatgagatcgagctggcccgcggcacctaccgggtgcgcggggatgtgatc
gacatacacccggcggaatccgacgaggaggcgatccggatcgagctgttcgacgacgag
atcgaggccctgtcggtcttcgacccactcaccggtgaggtcctgcgtcgcgtaccgcgc
tataccgtcttccccaagacccattacgccaccccgcgcgagaccatcctcaatgccgtg
gacgagatcaaggtggaactgaaggaccgcctgatctggctgcgcgacaacgacaagctg
gtggaggcgcagcgactggaacagcggaccatcttcgacatggagatgatgatggaggtc
ggctattgctccggaatcgaaaactacagccgctatctctccggccgcggccccggcgag
cccccgccgaccctctatgactatctgccggccaatgccatcgtggtcatcgacgagagt
catgtcacggtcccccagctcggcggcatgtatcgcggcgaccgctcgcgcaaggagaac
ctggtcgactacggcttccggctcccctcggccctggacaaccgccccatgcgcttcgag
gaattccaggcgcgccagccccagaccatctatgtctccgccaccccgcgccagtatgag
ctcgaccactccggcggcgccgtggtggaacaggtggtgcgccccaccggcctggtggac
ccggacctggaggtccgcccggccctgtcccaggtcgatgacctgctctccgagatcacc
ctgcgggccgccgtccacgagcgggtgctggtcacgacactcaccaagcgcatggccgag
gacctgaccgaatatctcaatgagcacggggtcaaggtccgctatctgcattcggacatc
gacaccgtggagcgggtcgagattatccgcgacctgcgcctgggcgaattcgacgtgctg
gtcggcatcaacctcctgcgcgaggggctcgatatgccggaggtatcgctggtcgccatc
ctcgatgcggacaaggagggcttcctgcgctccgagggatcattaatccagaccatcggc
cgtgccgcccgcaacatcaacggcaaggcgatcctttacgcggatcgcatcaccggctct
atggagcgcgcgatgggcgagaccgagcgccgccgaaccaaacagaccgccttcaacctg
gcccacgacatcaccccccagagcatccaaaagtccgtcgccgacatcctggaaggctcc
acccccggcgccccccgctcggcccgcgcctatgcccgggtggccgaggagatcgccgag
tacgccaacctcacaccggtgcagatggcgaaaaaaatcaaggccctggaaaaggagatg
tacggctacgccaaggacctggagttcgagaaggcggcggcggtgcgggatcggatcaag
gagttgcagggaaaagggttggcggtgtga
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integrated database retrieval system
