Candidatus Thiodictyon syntrophicum: THSYN_26830
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Entry
THSYN_26830 CDS
T05211
Name
(GenBank) recombinase RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
tsy
Candidatus Thiodictyon syntrophicum
Pathway
tsy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
THSYN_26830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsy03400
]
THSYN_26830
Enzymes [BR:
tsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
THSYN_26830
DNA repair and recombination proteins [BR:
tsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
THSYN_26830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
HHH_5
AAA_11
AAA_22
PIF1
Helicase_RecD
HHH
AAA_28
NTPase_1
nSTAND3
AAA_16
DEAD
UvrD-helicase
AAA_25
PRK
AAA
AAA_5
RsgA_GTPase
NACHT
ABC_tran
AAA_29
SRP54
YAcAr
TrwB_AAD_bind
RecR_HhH
NPHP3_N
ATP_bind_1
MeaB
ATPase_2
cobW
SLFN-g3_helicase
CbiA
TsaE
Motif
Other DBs
NCBI-ProteinID:
AUB84199
UniProt:
A0A2K8UFE9
LinkDB
All DBs
Position
6297386..6299617
Genome browser
AA seq
743 aa
AA seq
DB search
MTERSPPYQAHPPTEHLSGSIERVTFHSEQSGFCVLRVKVRGQRDLVTVIGSAASVTPGE
YLECQGEWVNDRQHGLQFKALQLRSVPPSTIEGIERYLGSGMVKGIGPHFARKLVHAFGE
RVFDVIEDNPDELRKLPGIGPKRQARVTGAWAEQKVIREIMVFLQSHGVGTARAVRIYKT
YGDASVARVTENPYRLALDIHGIGFKTADAIAQRLGIAADSLIRAQAGVRHCLQEVAGNG
HCAAYREALAEQAVALLTIPAPVIEQAIRAEVGEGNLIEEPIDTRPALFLTALQRAEQGI
AAGVRRLQLRLPVWGHIDPERAIPWVEGRTGLALSPSQRSAVAAAIKGKVTVITGGPGVG
KTTVVRSILDILAAKGVEMLLCAPTGRAAKRLAESTGREARTIHRVLEFDPKAMAFKRDQ
YSQLKTHLLVVDECSMVDTALMNQLLRAVPTPAAVLLVGDVDQLPSVGPGSVLADLIASG
VVPTCRLTEVFRQAAASRIIVNAHRINAGRLPEHAHEGPADSDFYLIPCNSAEEIQDRLL
RVVLERIPQRFGLDPVAEVQVLTPMNRGGLGARSLNVTLQQRLNPSSAPRVTRFGWTYAP
GDKVIQLINNYDKEVFNGDIGRIAAIDEEEGLVLVEIDGRRVEYEFGELDELSLAYATSI
HKAQGSEYPAVVIPLAMQHYMLLERNLLYTAVTRGRRLVVLIAEPRALAMAVKRVGSNLR
LTKLRQRLIEAAADAPGLEDETP
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaacgcagccctccctaccaggcccacccgcccaccgagcacctctcgggctcc
atcgagcgcgtgaccttccacagcgagcagagcgggttctgtgtcctgcgggtcaaggtc
cgcgggcagcgggacctggtgacggtgatcggctcggcggccagtgtgaccccgggcgag
tacctggagtgccagggcgagtgggtcaacgaccggcagcacgggctgcagttcaaggcg
ctgcaactgcgctcggtcccgccctccaccattgaggggatcgagcgctatctgggctcc
gggatggtcaagggcatcggcccgcacttcgcccgcaagctggtgcacgccttcggggag
cgggtcttcgacgtgatcgaggacaacccggacgagctgcgcaagctccccggcatcggc
cccaagcggcaggcgcgggtcaccggcgcctgggccgaacagaaggtgatccgcgagatc
atggtctttctccagtcccacggggtcggcaccgcgcgcgcggtgcgcatctacaagacc
tatggggacgcgtccgtcgcccgggtgaccgagaacccctatcggctggcgctcgatatc
cacggtatcggcttcaagaccgccgacgccatcgcccagcggctggggatcgcggcggac
tcgctgatccgggcccaggcgggggtgcgccactgtttgcaggaggtcgccggcaacggt
cactgtgccgcctaccgggaggccctggcggagcaggcggtcgcgctcctcaccatcccg
gcacccgtcatcgagcaggcgatccgcgccgaggtcggcgaggggaacctgatcgaggaa
ccgatcgacacgcgcccggccctcttcctcacggccttgcagcgcgccgagcagggcatc
gcggccggcgtgcggcggctgcagttgcgcctgccggtgtggggccacatcgaccccgag
cgggccatcccctgggtcgaggggcgcaccgggctcgccctgtccccctcccagcgcagc
gcggtggccgccgccatcaagggcaaggtcacggtcatcaccggcggccccggggtgggc
aagaccacggtggtgcgctctatcctggacatcctcgccgccaagggggtggagatgctg
ctgtgcgcaccgaccgggcgcgcggccaagcgcctggccgagtccaccgggcgggaggca
cgcaccatccaccgggtgctggagttcgaccccaaggcgatggccttcaagcgcgaccaa
tactcccagctcaagacgcacctgctagtggtcgatgagtgctccatggtcgatacggcc
ctgatgaaccaactcctgcgcgcggtgccgaccccggccgcggtgctgctggtgggtgac
gtggaccaattgccctcggtggggccgggctcggtgctcgccgacctgatcgcctccggg
gtggtccccacctgccgcctgaccgaggtcttccgtcaggcggcggcgtcgcggatcatc
gtcaatgcacatcgcatcaacgccgggcggctgccggaacacgcgcacgaggggccggcg
gacagcgacttttatctcatcccctgcaacagcgccgaggagatccaggaccggctgctg
cgggtggtgctggagcgcatcccgcagcgcttcggcctggacccggtggccgaggtacag
gtcttgacccccatgaaccgcggcggactcggtgcgcgctcactcaatgtcacgctgcaa
cagcgtctgaaccccagtagcgcgccccgggtgacccgcttcggctggacctatgccccg
ggggacaaggtcatccaactcatcaacaactatgacaaggaggtcttcaacggcgatatc
gggcgcatcgccgccatcgacgaggaggagggtctggtcctggtggagatcgacgggcgg
cgggtggagtatgagttcggcgaactcgacgagttgtcgctcgcctatgccacctccatc
cacaaggcgcaggggtccgaatacccggcggtggtgatcccactggcgatgcaacactac
atgctgttggaacgtaatctgctctataccgccgttacccgcgggcggcggctggtggtg
ctgatcgccgaaccccgggccctggcgatggcggtcaagcgggtcgggtccaacctgcgg
ttgacgaagttgcggcagcgcttgatcgaggcggcggccgacgcacccggcttggaggac
gagacgccgtag
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