Candidatus Thiodictyon syntrophicum: THSYN_27465
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Entry
THSYN_27465 CDS
T05211
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsy
Candidatus Thiodictyon syntrophicum
Pathway
tsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THSYN_27465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsy03019
]
THSYN_27465
03009 Ribosome biogenesis [BR:
tsy03009
]
THSYN_27465
Enzymes [BR:
tsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THSYN_27465
Messenger RNA biogenesis [BR:
tsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THSYN_27465
Ribosome biogenesis [BR:
tsy03009
]
Prokaryotic type
rRNA helicases
THSYN_27465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AUB84305
UniProt:
A0A2K8UFI2
LinkDB
All DBs
Position
complement(6455132..6457840)
Genome browser
AA seq
902 aa
AA seq
DB search
MDTPNTAAAAGNEAQSVDPELSTESIAAPVAETTADPIAVIAELIAEGDADPVAAAATAP
VSEPDDEPVNEPVTEPVDDPPPVAPVTEPPAAASAPAPIAAAPASAAPVEETPDDGFATL
GLSAEVARAVAELGYETATAVQLRCIPPLLAGRDVMGQAQTGTGKTAAFALPLLSRLDPQ
AKPPQVLVLTPTRELALQVAEAFQRYAHHIPGFHVAPIYGGQSYGLQVRQLQRAPEVIVG
TPGRVMDHLRRGTLSLVALKALVLDEADEMLNMGFAEDIDWIFEQTPPERQVALFSATMP
PGIMKVAREHLNDPVEIRIESATATVDTIEQQHVVVTRFHKADVLTRILELETFDGMLIF
VRTKGGTTELVDKLRSQGFAAEALNGDMNQEMRERTVDRLKGGQLDILVATDVAARGLDV
ERISHVVNFDIPTDPSAYVHRIGRTGRAGRAGKAILLVEPRERGLLRSIERTIRRPIPEM
PAPSAEQLSASRIDRFTTQLRETLAEQDLDFFYRLIARVAKEQELELMDIAAAASYLIQR
ERPLDVKEPPREARRDSRDGPYERPRRPPYGRDERPAGRGDDRGPRPPRGDRDGAPRFDN
RAERPAPSFNRDRPPQRDDRPFGGERDRQPTQVPYQGVRARTDERPAYQREREAQGGERP
RFDRDRERGPARDDRPFRPDRDARPAYRDQGQPPFRDQGQPPFRERDGNRDGNRDDGRDD
NRGNRDPRFERPAGPPRDGYRDAPRPEFRPDSRPPRDREERAPRDRGVDLVQHRIEVGHR
DGVTPREIVGAIANESGLEGRYIGHIDIQDDHAVVDLPAGMPREIFAHLQRVFVCGKELQ
ISVMEGGAPRPARPPRDDRDGAPRPPRPRDDSRGPAPRRFGADDRGPRAPRPEGGFRKKP
RD
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atggatacccccaacaccgccgcggcagccggcaacgaggcgcaaagcgtcgatcccgaa
ctgagcaccgagtcgatcgcggcacccgtcgccgagacgaccgccgatccgatcgccgtg
atcgccgagctgattgccgagggcgatgctgatccggtcgccgcggccgcgaccgcaccg
gtcagcgaaccggacgacgagccggtcaatgagccggtcacggagccggtcgacgacccg
ccccccgtcgcccccgtgaccgagccgcccgccgccgcgtcggccccggccccgatcgcc
gccgccccggcgtcggctgcgcccgtcgaggagacccccgacgacggcttcgcgacgctc
ggcctctccgccgaggtcgcccgcgccgtggcggaactgggctacgagaccgccaccgcg
gtgcagttgcgctgtatccccccgctgctcgcgggccgcgatgtcatgggccaggcccag
accggcaccggtaagacggcggccttcgccctgccgctgctctcgcgcctggacccgcag
gccaagccgccgcaggtgctggtgctgacgccgacccgggaactggccctgcaggtcgcc
gaggccttccagcgctatgcccaccacatcccgggcttccatgtcgcgcccatctatgga
ggacagagctacgggctccaggtccgccagctccagcgcgcgccggaggtgatcgtcggg
accccggggcgggtcatggaccatctgcgccgcggcaccctgtcgctggtcgcgctcaag
gccctggtcctggacgaggccgacgagatgctcaacatgggcttcgccgaggacatcgac
tggatcttcgagcagaccccgcccgagcgtcaggtggccctgttctccgccaccatgccc
ccgggcatcatgaaggtcgcccgtgagcacctgaatgacccggtcgagatccgcatcgag
tcggccaccgccacggtcgacaccatcgagcagcagcatgtcgtggtcacccgcttccac
aaggcggacgtcctgacccgcatcctggagctcgagaccttcgacggcatgttgatcttc
gtgcgcaccaagggcggcaccacggaactggtcgacaagctgcgctcccagggcttcgcg
gccgaggccctgaacggcgacatgaaccaggagatgcgcgagcgcacggtggaccggctc
aagggcggccagctcgacatcctggtggcgaccgatgtggccgcccgcgggctggacgtg
gagcggatcagccatgtggtcaacttcgatatcccgaccgacccctcggcctatgtgcac
cgcatcgggcgcaccgggcgcgccgggcgcgcgggcaaggcgatcctgctggtggagccg
cgcgagcggggcctcctgcgctccatcgagcgcaccatccgccgcccgatcccggagatg
ccggcgccctccgccgagcaactcagcgcctcgcgcatcgaccgctttaccacccaactg
cgcgagaccctggccgagcaggacctggacttcttctaccgcctgatcgcccgcgtcgcc
aaggagcaggaactggagctgatggacatcgccgccgcggcgagctatctgatccagcgc
gagcgtccgctcgacgtgaaggagccgccccgcgaggcacggcgcgactcgcgcgacggg
ccctatgagcgcccgcgccgcccgccctacggccgcgacgagcgcccggccgggcgcggc
gacgaccgcggcccgcgcccgccgcgcggcgaccgggacggggccccgcgcttcgacaac
cgtgcggagcgcccggcaccctccttcaaccgcgaccgcccgccgcagcgtgacgaccgg
cccttcggcggcgagcgtgaccgccagcccacccaggtcccctaccagggcgtgcgcgcc
cgcaccgacgagcgtccggcctaccagcgcgagcgtgaggcccagggcggggagcgcccg
cgtttcgaccgtgatcgcgagcgcggcccggcgcgcgacgaccgccccttccgcccggat
cgggacgcccggccggcctaccgcgaccagggacagccgcccttccgtgatcaggggcag
ccccccttccgcgaacgcgacggcaatcgcgacggcaaccgggacgatgggcgcgacgac
aaccgcggcaaccgcgacccgcgcttcgagcgccccgcgggaccgccgcgtgacggctac
cgcgacgccccgcgcccggaattccgcccggacagccggccgccgcgcgaccgtgaggag
cgcgccccgcgtgatcggggggtcgacctggtccagcaccgcatcgaggtcggacaccgc
gacggggtgaccccgcgcgagatcgtcggcgccatcgccaacgagtccggactggagggc
cgctatatcggccacatcgacatccaggacgaccatgccgtggtggacctgccggccggg
atgccgcgcgagatcttcgcgcacctgcagcgcgtcttcgtctgcggcaaggagttgcag
atctcggtgatggaaggcggcgccccccgccccgcgcgcccgccgcgcgatgaccgcgac
ggtgcaccacgcccgccgcgcccccgggacgattcccgcggaccggccccgcggcgcttc
ggcgccgatgaccgcggcccccgggcgccgcggcccgagggtgggttccgcaagaagccg
cgcgactga
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