Candidatus Thiodictyon syntrophicum: THSYN_31845
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Entry
THSYN_31845 CDS
T05211
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tsy
Candidatus Thiodictyon syntrophicum
Brite
KEGG Orthology (KO) [BR:
tsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsy03016
]
THSYN_31845
Enzymes [BR:
tsy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
THSYN_31845
Transfer RNA biogenesis [BR:
tsy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
THSYN_31845
Prokaryotic type
tRNA splicing ligases
THSYN_31845
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DNA_ligase_IV
Motif
Other DBs
NCBI-ProteinID:
AUB85508
UniProt:
A0A2K8UIX8
LinkDB
All DBs
Position
pTs485:complement(196427..197623)
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AA seq
398 aa
AA seq
DB search
MPIKQVITEGEKPVKVWTDELDAYARSQLVNLSKMPFIHRHVAAMPDVHGGIGATIGSVI
ATHKAIIPAAVGVDIGCGMAAVRTSLTAEQIDEHSLKKVFDQISRDVPVGRNQHKDDRAL
TESARPFDAALTAMTQKHPQLLKAFGRFSNWVNQMGTLGGGNHFIEVCLDESGQVWVMLH
SGSRGIGNAIGHYFIELARRDMERWFIQLPDRDLAYFPEGSEHFDDYVAAVSWAQSYARE
NRDQMMTLVLAALARHLPAFQATQAVINCHHNYVEREHHFNENVWVTRKGAIRARADDLG
IIPGSMGARSYIVRGKGNPDSFCSCAHGAGRRMSRTAAEHQFTVADLAAQTQGVICRKDK
GVIDEIPGAYKDIDQVMANQADLVEVVHTLKQVVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcaagcaagtgattaccgagggcgagaagcccgtcaaggtctggaccgacgag
ctggacgcctatgcgcgctcgcagttggtgaatctctccaagatgcccttcatccaccgt
catgttgccgccatgcccgacgtgcacggtggtatcggtgccaccatcggctcggtcatc
gccacccacaaggcgatcatcccggccgcggtgggggtggatatcggctgcggcatggcg
gcggtgcggacctcgctcaccgctgaacagatcgacgagcactcgctgaagaaggtcttc
gaccagatcagccgcgacgtgccggtcgggcgcaaccagcataaggatgaccgcgccctg
accgagtcggcccggcccttcgatgccgccctgaccgcgatgacgcagaagcatccgcaa
ctgctcaaggccttcgggcgcttctccaactgggtgaaccagatgggcacgctcggcggg
ggcaaccacttcatcgaggtctgtctggatgagtcggggcaggtctgggtcatgctgcac
tcgggcagccgcggtatcggcaacgccatcggtcattacttcatcgaattggcgcggcgc
gacatggagcgctggttcatccaattgccggaccgcgatctcgcctattttccggagggc
agtgagcacttcgacgactatgtggcggcggtctcgtgggcccagtcctatgcgcgggag
aaccgcgaccagatgatgacgctggtcctcgcggcactcgcccggcacctgccggccttc
caggcgacccaggcggtgatcaactgtcaccacaactatgtggagcgggagcaccacttc
aacgagaacgtctgggtgacgcgcaagggggccatccgggcgcgggcggacgatctggga
atcatccccggcagcatgggcgcgcgcagctatatcgtgcgcggcaaaggcaaccccgac
agcttctgctcctgcgcccacggcgcgggacggcgcatgagccgcaccgcggccgagcac
cagttcaccgttgccgacctggcggcccagacccagggcgtcatctgccgcaaggacaag
ggcgtgatcgacgagatcccaggcgcctacaaggacatcgaccaggtcatggcgaaccag
gcggacctggtcgaggtggtgcatacgctcaagcaggtggtgtgtgtgaaggggtga
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