Trichothermofontia sichuanensis: OOK60_05015
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Entry
OOK60_05015 CDS
T09010
Name
(GenBank) RNA-binding protein hfq
KO
K03666
host factor-I protein
Organism
tsz
Trichothermofontia sichuanensis
Pathway
tsz02024
Quorum sensing
tsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OOK60_05015
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
OOK60_05015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsz03019
]
OOK60_05015
03036 Chromosome and associated proteins [BR:
tsz03036
]
OOK60_05015
Messenger RNA biogenesis [BR:
tsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
OOK60_05015
Chromosome and associated proteins [BR:
tsz03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
OOK60_05015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq_1
Hfq
Motif
Other DBs
NCBI-ProteinID:
UZQ55438
LinkDB
All DBs
Position
complement(1155784..1155996)
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AA seq
70 aa
AA seq
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MTEFDTNLPSIRQLQTFVKEKKEVEIKLVTDDLLVGHVFWQDSQCVCLKDQYGQEVIIWR
QALVYLKPKP
NT seq
213 nt
NT seq
+upstream
nt +downstream
nt
atgactgaattcgacacaaacttgccgagcatccgccaactccagacctttgtcaaagaa
aaaaaagaggtggagattaaactggtcactgatgacctcctagtgggtcatgttttttgg
caggattcccaatgtgtttgcctgaaggatcaatacggccaggaggtgatcatctggcgg
caggccctggtttacctcaaacccaaaccctga
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