KEGG   Trichothermofontia sichuanensis: OOK60_05015
Entry
OOK60_05015       CDS       T09010                                 
Name
(GenBank) RNA-binding protein hfq
  KO
K03666  host factor-I protein
Organism
tsz  Trichothermofontia sichuanensis
Pathway
tsz02024  Quorum sensing
tsz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tsz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OOK60_05015
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    OOK60_05015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tsz03019]
    OOK60_05015
   03036 Chromosome and associated proteins [BR:tsz03036]
    OOK60_05015
Messenger RNA biogenesis [BR:tsz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     OOK60_05015
Chromosome and associated proteins [BR:tsz03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    OOK60_05015
SSDB
Motif
Pfam: Hfq_1 Hfq
Other DBs
NCBI-ProteinID: UZQ55438
LinkDB
Position
complement(1155784..1155996)
AA seq 70 aa
MTEFDTNLPSIRQLQTFVKEKKEVEIKLVTDDLLVGHVFWQDSQCVCLKDQYGQEVIIWR
QALVYLKPKP
NT seq 213 nt   +upstreamnt  +downstreamnt
atgactgaattcgacacaaacttgccgagcatccgccaactccagacctttgtcaaagaa
aaaaaagaggtggagattaaactggtcactgatgacctcctagtgggtcatgttttttgg
caggattcccaatgtgtttgcctgaaggatcaatacggccaggaggtgatcatctggcgg
caggccctggtttacctcaaacccaaaccctga

DBGET integrated database retrieval system